Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 0.0e+00 1126.7 573 100.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 2.3e-193 679.5 494 72.7
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 2.1e-191 672.9 492 70.9
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 8.1e-183 644.4 524 65.6
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-182 643.7 489 67.5
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 2.0e-181 639.8 486 69.1
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.4e-181 639.0 482 68.3
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 3.8e-180 635.6 489 67.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 6.4e-180 634.8 490 66.1
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.4e-179 632.9 483 68.5
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 4.2e-179 632.1 490 65.9
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 1.2e-178 630.6 490 67.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 6.0e-178 628.2 489 69.1
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 5.1e-177 625.2 503 67.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 6.6e-177 624.8 490 65.5
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 8.7e-177 624.4 480 69.4
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.3e-175 620.5 488 66.2
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.3e-175 620.5 484 67.6
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.6e-175 619.0 488 66.4
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 8.1e-175 617.8 484 67.6
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.1e-174 617.5 488 66.0
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.4e-174 617.1 487 65.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.4e-174 616.3 492 66.5
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.5e-173 613.6 497 66.2
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 3.4e-173 612.5 497 67.8
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 4.5e-173 612.1 511 65.8
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 5.8e-173 611.7 489 66.3
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.2e-172 609.8 488 65.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.1e-171 607.4 555 60.2
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.8e-169 600.1 487 65.5
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-169 600.1 497 65.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 2.5e-168 596.3 484 65.5
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.3e-168 595.9 489 64.4
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 4.8e-167 592.0 464 66.4
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.1e-166 590.9 484 63.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.4e-166 589.7 503 62.6
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.2e-165 587.4 488 63.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.2e-163 578.9 495 62.0
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 2.7e-162 576.2 477 64.8
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.0e-161 574.3 487 63.0
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.8e-161 573.5 496 63.3
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 5.1e-161 572.0 486 62.8
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.1e-161 572.0 473 63.8
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.5e-160 569.7 485 64.5
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 7.4e-160 568.2 493 61.3
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 7.4e-160 568.2 478 62.6
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 4.8e-159 565.5 480 61.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 4.8e-159 565.5 489 63.2
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.4e-158 563.9 489 62.8
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.8e-158 563.5 478 64.0
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 4.0e-158 562.4 485 62.9
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 5.3e-158 562.0 478 63.8
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 5.3e-158 562.0 494 60.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.5e-157 560.5 503 62.6
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.0e-157 560.1 503 62.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.0e-156 557.8 479 61.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.0e-156 557.8 471 62.8
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 4.9e-156 555.4 488 62.5
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.4e-156 554.7 488 61.3
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.4e-156 554.7 490 61.0
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 8.4e-156 554.7 481 60.9
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.1e-155 554.3 481 63.2
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 8.7e-153 544.7 482 61.4
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 8.7e-153 544.7 481 63.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.1e-152 544.3 475 61.5
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.1e-152 544.3 476 61.3
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.5e-152 543.1 475 60.8
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 4.3e-152 542.3 457 62.4
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 7.4e-152 541.6 489 60.3
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.6e-151 540.4 477 60.0
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.6e-151 540.4 485 61.9
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.8e-150 537.0 475 61.1
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.6e-149 533.1 478 60.9
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 3.4e-149 532.7 475 61.3
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 5.9e-149 531.9 475 60.2
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 5.0e-148 528.9 484 58.7
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.0e-148 528.9 459 62.5
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 8.5e-148 528.1 475 60.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 4.2e-147 525.8 563 52.9
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 4.2e-147 525.8 478 58.4
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 3.6e-146 522.7 484 60.5
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 7.9e-146 521.5 468 61.1
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 5.1e-145 518.8 475 59.4
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.1e-144 517.7 484 59.7
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-144 517.7 475 59.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-144 517.3 475 58.1
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 7.4e-144 515.0 475 59.4
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 6.9e-142 508.4 486 57.6
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 9.1e-142 508.1 473 59.0
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 4.5e-141 505.8 475 59.2
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 4.5e-141 505.8 475 59.2
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.3e-140 504.2 475 57.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.2e-140 503.4 473 59.8
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.2e-140 503.4 475 57.9
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.2e-140 503.4 492 58.7
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 5.0e-140 502.3 481 57.6
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 5.0e-140 502.3 454 62.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.4e-139 500.7 475 57.3
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.6e-138 496.1 430 62.1
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.0e-136 490.3 475 57.1
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.0e-136 490.3 486 56.6
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.2e-135 486.9 485 56.1
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 3.1e-134 483.0 491 54.0
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 4.2e-131 472.6 476 54.6
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 8.8e-129 464.9 424 60.8
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 2.8e-119 433.3 404 61.6
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.5e-112 411.0 484 49.8
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.6e-112 410.2 425 54.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.4e-105 387.9 472 48.3
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.2e-103 380.6 530 43.6
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.7e-101 373.6 303 65.0
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.3e-99 366.7 407 53.1
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 9.5e-99 365.2 338 58.9
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.2e-98 364.8 530 42.6
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 8.0e-98 362.1 471 45.0
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.6e-96 357.1 271 68.6
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 9.5e-83 312.0 617 36.1
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 8.1e-74 282.3 558 36.9
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 9.0e-57 225.7 482 34.6
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.9e-51 208.0 469 32.4
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 3.7e-50 203.8 499 31.7
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 3.5e-45 187.2 156 63.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.4e-41 175.3 285 41.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-38 165.2 97 80.4
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.3e-36 157.9 226 45.1
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.4e-28 132.1 110 60.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 8.2e-26 122.9 186 45.2
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 4.1e-25 120.6 186 45.2
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 6.9e-25 119.8 91 73.6
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 5.5e-22 110.2 162 43.8
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.9e-20 104.0 74 63.5
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-19 102.4 177 41.2
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.0e-19 101.7 72 68.1
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.2e-18 98.2 223 32.7
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.4e-14 85.5 116 47.4
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 3.2e-14 84.3 112 51.8
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 6.7e-12 76.6 118 44.9
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 7.0e-09 66.6 39 76.9
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 9.1e-09 66.2 144 34.7
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.2e-08 65.9 64 56.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 1.2e-08 65.9 93 46.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 4.5e-08 63.9 93 45.2
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 2.9e-07 61.2 68 52.9
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 3.8e-07 60.8 34 82.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.1e-06 59.3 79 48.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.9e-06 58.5 67 49.3
MBI17_g44318_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D012920 3.2e-06 57.8 67 49.3


User provided reference genes

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