Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 4.1e-128 461.5 243 100.0
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 1.9e-77 293.1 224 69.2
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 3.9e-70 268.9 213 67.1
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.6e-68 263.5 212 67.9
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.8e-68 261.9 210 66.7
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 1.8e-67 260.0 211 66.8
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 3.1e-67 259.2 215 65.1
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.5e-66 255.4 213 67.1
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.7e-65 253.4 223 65.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 2.9e-65 252.7 209 67.0
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 6.5e-65 251.5 210 64.3
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 8.5e-65 251.1 213 64.3
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.5e-64 249.6 210 67.6
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 3.2e-64 249.2 210 63.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 3.2e-64 249.2 211 66.8
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.2e-64 248.1 222 60.4
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 7.2e-64 248.1 221 62.4
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 7.2e-64 248.1 219 62.1
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 9.4e-64 247.7 230 60.9
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 9.4e-64 247.7 210 62.4
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.4e-64 247.7 231 60.2
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.2e-63 247.3 221 61.5
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.2e-63 247.3 210 63.3
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.6e-63 246.9 211 63.0
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.1e-63 246.5 147 83.0
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.1e-63 246.5 215 64.2
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.1e-63 246.5 214 63.6
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.7e-63 246.1 221 61.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 3.6e-63 245.7 209 64.6
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.0e-62 244.2 207 64.3
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 3.0e-62 242.7 219 63.5
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 3.0e-62 242.7 232 59.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 5.1e-62 241.9 209 61.7
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.5e-61 240.4 209 61.2
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 3.3e-61 239.2 209 61.7
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 4.3e-61 238.8 209 61.2
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 7.4e-61 238.0 220 58.2
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 9.7e-61 237.7 166 74.1
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.2e-60 236.5 211 63.5
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.2e-60 236.5 209 57.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.8e-60 236.1 209 57.9
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.7e-60 235.7 209 58.4
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.4e-59 233.8 203 60.1
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.8e-59 233.4 217 58.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.8e-59 233.4 218 58.3
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 4.1e-59 232.3 212 59.4
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.1e-59 232.3 226 57.5
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 9.1e-59 231.1 215 58.6
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.2e-58 230.7 212 60.4
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.5e-58 230.3 177 69.5
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.5e-58 230.3 251 52.6
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 2.0e-58 229.9 209 60.8
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 3.4e-58 229.2 206 58.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 5.9e-58 228.4 212 59.4
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 1.0e-57 227.6 203 58.6
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.3e-57 227.3 222 55.9
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.2e-57 226.5 221 56.6
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 5.0e-57 225.3 195 64.1
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.0e-57 225.3 208 58.7
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.4e-56 223.8 214 57.9
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.9e-56 223.4 209 56.0
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 7.9e-55 218.0 210 56.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.0e-54 217.6 281 50.9
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.7e-54 214.9 222 54.5
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.1e-53 214.2 237 53.2
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 9.7e-53 211.1 211 54.0
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 9.7e-53 211.1 209 57.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.3e-52 210.7 212 53.8
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.7e-52 210.3 219 51.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 3.7e-52 209.1 207 53.1
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.1e-51 207.6 204 54.4
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 3.1e-51 206.1 239 50.2
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 4.1e-51 205.7 215 52.1
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 4.1e-51 205.7 210 54.3
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 3.5e-50 202.6 203 54.2
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 4.5e-50 202.2 212 51.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 5.9e-50 201.8 217 52.5
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.8e-49 199.1 195 58.5
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 6.5e-49 198.4 209 53.1
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.5e-48 197.2 210 53.8
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.9e-48 196.8 182 60.4
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 4.2e-48 195.7 209 50.7
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 5.5e-48 195.3 209 51.2
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 7.2e-48 194.9 209 55.0
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.2e-47 194.1 251 47.8
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 4.7e-47 192.2 205 49.8
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 4.7e-47 192.2 205 49.8
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 3.3e-45 186.0 206 51.9
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 9.7e-45 184.5 210 48.1
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 3.1e-43 179.5 234 46.6
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.7e-41 173.7 144 59.0
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 4.2e-40 169.1 114 71.9
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 7.2e-40 168.3 228 47.4
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 7.5e-37 158.3 206 48.1
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 2.7e-34 149.8 122 67.2
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 3.4e-29 132.9 135 57.0
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 7.5e-29 131.7 147 53.7
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.2e-28 130.2 135 56.3
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 4.8e-28 129.0 84 73.8
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 3.5e-26 122.9 218 41.7
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 2.1e-23 113.6 128 53.1
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 4.7e-23 112.5 154 41.6
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 1.4e-22 110.9 75 69.3
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.3e-20 104.4 211 35.5
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.5e-16 90.9 78 51.3
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 7.3e-16 88.6 55 78.2
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 9.5e-16 88.2 78 51.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.8e-15 86.7 132 39.4
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.9e-12 75.9 47 70.2
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 8.6e-09 65.1 123 34.1
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.5e-08 64.3 147 31.3
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 3.3e-08 63.2 154 31.8
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 3.3e-08 63.2 173 31.2
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 4.3e-08 62.8 132 31.8
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.6e-08 62.4 100 41.0
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 5.6e-08 62.4 132 31.8
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 5.6e-08 62.4 107 35.5
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 5.6e-08 62.4 107 35.5
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.2e-07 61.2 149 31.5
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 2.1e-07 60.5 62 51.6
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 2.1e-07 60.5 113 31.0
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.1e-07 60.5 132 28.8
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 2.8e-07 60.1 142 31.7
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 8.0e-07 58.5 146 30.8
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.1e-06 58.2 169 29.0
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.4e-06 57.8 132 29.5
Nitab4.5_0000421g0070 Nicotiana tabacum HOM05D000868 ORTHO05D000711 1.8e-06 57.4 139 28.1
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 2.3e-06 57.0 132 29.5
BcaC02g08518 Brassica carinata HOM05D003946 ORTHO05D004485 2.3e-06 57.0 111 36.0
C04p53510 Brassica napus HOM05D003946 ORTHO05D004485 2.3e-06 57.0 111 36.0
BolC4t26905H Brassica oleracea HOM05D003946 ORTHO05D004485 2.3e-06 57.0 111 36.0
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.1e-06 56.6 167 28.7
Nitab4.5_0002545g0010 Nicotiana tabacum HOM05D003946 ORTHO05D004485 3.1e-06 56.6 149 30.2
Cpa.g.sc37.157 Carica papaya HOM05D003946 ORTHO05D004485 4.0e-06 56.2 95 37.9
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 4.0e-06 56.2 158 31.0
BraA04t17439Z Brassica rapa HOM05D003946 ORTHO05D004485 5.2e-06 55.8 112 36.6
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 5.2e-06 55.8 171 29.2
A04p18280 Brassica napus HOM05D003946 ORTHO05D004485 6.8e-06 55.5 88 38.6
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 6.8e-06 55.5 140 29.3
FAN08G3479 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.8e-06 55.5 50 64.0
Nitab4.5_0005118g0010 Nicotiana tabacum HOM05D000868 ORTHO05D000711 6.8e-06 55.5 139 28.8
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 8.9e-06 55.1 139 30.2
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 8.9e-06 55.1 146 29.5


User provided reference genes

Program Settings