Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.8e-53 210.3 100 100.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 9.9e-44 179.9 100 84.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.2e-43 178.7 100 83.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.4e-42 176.0 102 80.4
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.6e-41 172.6 100 80.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.5e-39 166.0 93 77.4
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.3e-39 164.9 98 74.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 5.6e-39 164.1 101 75.2
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 7.3e-39 163.7 103 72.8
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.7e-38 161.0 98 77.6
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.7e-38 161.0 98 77.6
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.7e-38 161.0 96 77.1
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 4.7e-38 161.0 101 74.3
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 4.0e-37 157.9 102 74.5
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 8.9e-37 156.8 99 76.8
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 8.9e-37 156.8 105 73.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-36 156.0 98 74.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.6e-36 155.2 97 74.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.6e-36 155.2 97 74.2
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 4.4e-36 154.5 101 75.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.8e-36 154.1 101 74.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.8e-36 154.1 98 74.5
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.6e-36 153.7 97 74.2
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 9.9e-36 153.3 97 74.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 9.9e-36 153.3 97 71.1
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.3e-35 152.9 100 73.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.7e-35 152.5 100 73.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 71.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 71.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.2e-35 152.1 87 79.3
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.9e-35 151.8 97 75.3
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.8e-35 151.4 98 73.5
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 3.8e-35 151.4 101 75.2
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.8e-35 151.4 101 75.2
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.8e-35 151.4 98 72.4
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 8.4e-35 150.2 101 73.3
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 8.4e-35 150.2 103 70.9
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-34 149.4 101 74.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-34 149.4 101 73.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.9e-34 149.1 99 73.7
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-34 148.7 96 72.9
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.4e-34 148.7 96 72.9
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 3.2e-34 148.3 102 73.5
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.2e-34 147.9 102 72.5
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 4.2e-34 147.9 98 72.4
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 7.1e-34 147.1 105 71.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 7.1e-34 147.1 105 70.5
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 73.5
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.6e-33 146.0 97 71.1
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.6e-33 146.0 98 71.4
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.6e-33 146.0 97 72.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.6e-33 146.0 97 72.2
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.7e-33 145.2 104 69.2
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.7e-33 145.2 96 67.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.5e-33 144.8 98 70.4
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 6.0e-33 144.1 89 77.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 6.0e-33 144.1 98 73.5
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 7.8e-33 143.7 98 69.4
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.3e-32 142.9 101 67.3
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.7e-32 142.5 99 67.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.7e-32 142.5 95 72.6
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.3e-32 142.1 98 67.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.3e-32 142.1 101 70.3
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 3.0e-32 141.7 97 71.1
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 3.9e-32 141.4 102 65.7
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.9e-32 141.4 98 67.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 5.1e-32 141.0 100 70.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 6.6e-32 140.6 100 70.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 8.7e-32 140.2 105 69.5
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 8.7e-32 140.2 102 63.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.1e-31 139.8 97 69.1
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.9e-31 139.0 100 69.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.5e-31 138.7 100 69.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.5e-31 138.7 98 66.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.5e-31 138.7 98 66.3
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 3.3e-31 138.3 104 67.3
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 4.3e-31 137.9 100 66.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 4.3e-31 137.9 100 68.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 7.3e-31 137.1 99 67.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 9.6e-31 136.7 98 67.3
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 9.6e-31 136.7 98 67.3
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 9.6e-31 136.7 100 67.0
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.6e-30 136.0 88 73.9
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.6e-30 136.0 89 74.2
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.6e-30 134.8 100 67.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.6e-30 134.8 98 64.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.6e-30 134.8 100 69.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.8e-30 134.4 97 70.1
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 4.8e-30 134.4 108 63.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.2e-30 134.0 96 62.5
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.1e-30 133.7 72 79.2
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-29 132.9 100 66.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.4e-29 132.9 104 66.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.8e-29 132.5 87 70.1
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 5.3e-29 131.0 102 65.7
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 6.9e-29 130.6 97 67.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 6.9e-29 130.6 99 64.6
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.2e-28 129.8 85 70.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.2e-28 129.8 101 64.4
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.5e-28 129.4 89 69.7
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.5e-28 129.4 89 71.9
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.6e-28 128.6 97 66.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.4e-28 128.3 95 63.2
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.4e-28 128.3 97 66.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.4e-28 128.3 102 66.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.9e-27 125.2 98 64.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.9e-27 125.2 99 64.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.8e-27 124.8 128 55.5
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 6.4e-27 124.0 91 65.9
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.4e-26 122.9 90 64.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 99 63.6
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.4e-26 122.9 99 63.6
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 2.4e-26 122.1 90 66.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.4e-26 122.1 90 67.8
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.4e-26 122.1 95 63.2
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.2e-26 121.7 100 59.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.2e-26 121.7 88 64.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 4.2e-26 121.3 96 64.6
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.2e-25 119.8 100 58.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.2e-25 119.8 88 64.8
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.2e-25 119.8 76 71.1
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.6e-25 119.4 87 60.9
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.1e-25 119.0 99 59.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.1e-25 119.0 96 63.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.6e-25 117.9 88 69.3
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.6e-23 110.9 89 58.4
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.0e-21 104.8 90 62.2
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 7.6e-20 100.5 77 59.7
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.7e-19 99.4 96 52.1
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.9e-19 97.8 72 66.7
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.1e-18 96.7 50 80.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.1e-17 92.4 73 63.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.9e-16 88.2 103 49.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.9e-16 88.2 73 63.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.7e-16 87.0 74 56.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 3.3e-15 85.1 75 57.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 9.6e-15 83.6 75 54.7
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.3e-14 83.2 72 61.1
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.8e-14 82.0 87 46.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.1e-13 80.1 74 60.8
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.1e-13 80.1 55 63.6
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.0e-13 78.2 108 46.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.5e-12 76.3 76 50.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-11 72.4 90 51.1
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 4.9e-11 71.2 108 42.6
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.2e-10 68.2 71 47.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.5e-09 65.1 35 77.1
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.3e-08 62.4 93 38.7
TAR048G0001 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.5e-07 59.7 36 80.6
TAR636G2680 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.5e-07 59.7 36 80.6
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 4.8e-06 54.7 51 56.9
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 4.8e-06 54.7 51 56.9
TAR633G2452 Trochodendron aralioides HOM05D032931 ORTHO05D005600 4.8e-06 54.7 36 75.0


User provided reference genes

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