Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.6e-98 361.3 191 100.0
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 6.0e-82 307.8 191 79.1
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.4e-70 270.0 191 69.6
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.3e-68 263.5 183 66.7
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 3.8e-68 261.9 188 68.6
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 4.9e-68 261.5 195 64.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 8.4e-68 260.8 183 66.1
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 7.1e-67 257.7 190 65.8
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 2.7e-66 255.8 190 64.2
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 4.6e-66 255.0 154 74.0
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 6.0e-66 254.6 192 71.4
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.0e-65 253.8 190 64.2
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.0e-65 253.8 190 64.2
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 1.0e-65 253.8 198 66.2
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.3e-65 253.4 190 63.7
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.3e-65 252.7 190 63.7
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.3e-65 252.7 191 67.5
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 3.0e-65 252.3 190 63.2
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 3.0e-65 252.3 190 63.2
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 3.9e-65 251.9 184 67.4
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 6.7e-65 251.1 154 74.7
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 6.7e-65 251.1 191 63.4
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.9e-64 249.6 194 64.9
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 3.3e-64 248.8 192 63.5
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.3e-64 248.4 193 63.2
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.3e-64 248.4 193 63.2
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.3e-63 246.9 191 63.4
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.1e-63 246.1 154 71.4
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 2.1e-63 246.1 154 74.0
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 8.1e-63 244.2 154 72.1
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.1e-62 243.8 190 61.6
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.1e-62 243.8 156 72.4
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.4e-62 243.4 153 73.2
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.4e-62 242.7 191 62.8
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.4e-62 242.7 184 63.6
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 3.1e-62 242.3 184 63.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.1e-62 242.3 154 72.1
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.1e-62 242.3 183 62.8
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 4.0e-62 241.9 154 70.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 4.0e-62 241.9 154 70.1
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 4.0e-62 241.9 189 65.1
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 5.3e-62 241.5 196 61.2
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 9.0e-62 240.7 189 65.6
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.2e-61 240.4 184 63.0
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.2e-61 240.4 154 70.8
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.5e-61 240.0 191 62.8
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 2.0e-61 239.6 154 71.4
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 2.0e-61 239.6 155 69.7
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 2.6e-61 239.2 155 71.6
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 3.4e-61 238.8 191 61.3
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 3.4e-61 238.8 184 63.6
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 4.5e-61 238.4 183 64.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 5.8e-61 238.0 155 69.7
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 7.6e-61 237.7 150 69.3
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 7.6e-61 237.7 191 60.2
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 1.3e-60 236.9 184 63.0
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.7e-60 236.5 184 62.5
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.7e-60 236.5 191 60.2
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.7e-60 236.5 194 60.8
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.7e-60 236.5 150 68.0
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.2e-60 236.1 194 61.3
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 3.8e-60 235.3 153 69.9
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 3.8e-60 235.3 185 63.2
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 4.9e-60 235.0 183 65.6
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.4e-60 234.6 154 70.8
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.4e-59 233.4 154 68.2
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.9e-59 233.0 150 68.0
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 4.2e-59 231.9 189 60.8
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 5.5e-59 231.5 154 67.5
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 7.1e-59 231.1 188 59.0
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 9.3e-59 230.7 150 68.0
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.2e-58 230.3 153 69.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.6e-58 229.9 192 59.9
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.1e-58 229.6 155 70.3
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.0e-57 227.3 155 67.1
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.0e-57 227.3 150 67.3
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.8e-57 226.5 154 68.2
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.8e-57 226.5 154 65.6
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.3e-57 226.1 150 66.7
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 2.3e-57 226.1 150 68.7
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.7e-57 224.6 150 66.0
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 8.7e-57 224.2 150 67.3
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.5e-56 223.4 189 58.7
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.5e-56 223.4 150 66.7
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 1.5e-56 223.4 150 64.7
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.5e-56 222.6 154 63.6
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.3e-56 222.2 149 69.1
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.3e-56 222.2 186 57.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 3.3e-56 222.2 150 65.3
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 5.6e-56 221.5 149 65.8
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 7.4e-56 221.1 154 62.3
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.4e-56 221.1 150 66.0
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 7.4e-56 221.1 184 60.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 2.1e-55 219.5 154 64.9
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 2.8e-55 219.2 149 67.8
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 6.2e-55 218.0 150 62.7
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.2e-55 218.0 185 59.5
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 6.2e-55 218.0 168 61.9
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.4e-54 216.9 150 64.7
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 6.9e-54 214.5 153 60.8
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 1.5e-53 213.4 205 53.2
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.0e-53 213.0 150 64.7
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 7.6e-53 211.1 154 58.4
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.3e-52 210.3 154 58.4
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.2e-50 203.8 151 62.9
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.6e-47 193.4 156 57.7
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.1e-46 190.7 155 57.4
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 7.6e-45 184.5 190 51.6
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 2.2e-44 183.0 155 55.5
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.9e-44 182.6 155 55.5
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 5.0e-44 181.8 157 56.1
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.7e-42 176.0 156 59.0
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.9e-40 169.9 154 51.9
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.9e-40 169.9 154 51.9
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.7e-40 168.3 150 52.0
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 1.0e-33 147.5 144 54.2
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.8e-33 146.7 148 53.4
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 8.8e-33 144.4 119 58.8
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 4.8e-31 138.7 83 71.1
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.1e-30 135.6 83 72.3
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 7.7e-29 131.3 118 55.9
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 9.4e-27 124.4 89 67.4
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.6e-26 123.6 148 41.9
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.0e-24 116.7 73 75.3
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 2.2e-23 113.2 70 71.4
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.5e-21 105.9 74 68.9
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 3.5e-21 105.9 71 69.0
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 7.2e-19 98.2 144 36.1
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 1.2e-18 97.4 67 64.2
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-16 90.1 65 55.4
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.2e-15 86.7 83 50.6
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.2e-13 80.9 144 27.8
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.2e-12 76.6 73 54.8
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 8.5e-12 74.7 45 68.9
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.0e-09 67.8 143 23.8
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.8e-09 67.0 60 53.3


User provided reference genes

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