Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.0e-182 641.0 446 100.0
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.8e-127 459.1 321 82.6
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.8e-119 432.6 469 58.0
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.3e-114 417.5 325 75.4
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.4e-113 414.1 317 71.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.4e-113 413.3 308 70.8
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 3.1e-113 412.9 329 72.0
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 9.0e-113 411.4 339 68.4
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.2e-112 411.0 330 70.3
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.9e-111 406.4 462 59.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.9e-111 406.4 334 69.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 6.4e-111 405.2 319 68.7
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.4e-110 404.1 341 68.3
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.4e-110 403.3 455 57.4
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 3.2e-110 402.9 342 67.3
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 9.3e-110 401.4 336 67.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 9.3e-110 401.4 328 68.3
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.7e-109 399.8 317 72.2
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 7.9e-109 398.3 340 65.6
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.3e-108 397.5 331 67.4
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.3e-108 396.7 328 69.2
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.7e-108 395.2 303 70.0
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 7.4e-107 391.7 242 81.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 9.6e-107 391.3 238 84.5
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.6e-107 391.3 303 71.0
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.6e-106 390.6 242 81.0
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 6.2e-106 388.7 242 81.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.1e-106 388.3 242 80.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.4e-105 387.5 303 69.3
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.8e-105 387.1 343 64.7
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.8e-105 387.1 339 64.3
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.1e-105 386.3 242 80.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 9.0e-105 384.8 242 81.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.6e-104 383.3 349 62.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 5.8e-104 382.1 242 78.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.0e-103 381.3 241 78.8
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.7e-103 380.6 342 66.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.7e-103 380.6 304 72.0
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.7e-103 380.6 241 79.3
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.7e-103 380.6 242 78.9
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 2.9e-103 379.8 241 79.3
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.8e-103 379.4 330 65.5
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 8.4e-103 378.3 241 78.8
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 8.4e-103 378.3 240 80.0
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.4e-102 377.5 241 78.4
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.5e-102 376.7 340 61.8
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.2e-102 376.3 241 77.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 3.2e-102 376.3 241 77.2
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 7.1e-102 375.2 242 77.7
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.2e-101 374.4 241 78.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.6e-101 374.0 241 79.3
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.7e-101 373.2 241 76.3
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.7e-101 373.2 241 76.3
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.7e-101 373.2 241 76.3
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.0e-101 372.1 323 67.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.0e-100 369.8 332 62.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.5e-99 367.5 331 64.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.9e-99 367.1 328 64.0
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.5e-99 366.7 331 62.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 5.7e-99 365.5 330 62.1
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.3e-98 364.4 331 62.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.7e-98 362.8 329 65.0
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.8e-98 362.5 319 65.2
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 6.2e-98 362.1 242 74.8
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.1e-97 361.3 242 74.8
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.4e-97 360.1 242 74.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.4e-97 360.1 242 74.4
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.4e-97 360.1 327 63.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 4.0e-97 359.4 241 77.6
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 6.9e-97 358.6 323 65.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 6.9e-97 358.6 238 76.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 9.0e-97 358.2 342 62.3
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.5e-96 357.5 323 61.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.4e-96 356.3 313 65.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 5.8e-96 355.5 330 62.1
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.3e-95 354.4 243 74.1
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.7e-95 354.0 326 64.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.9e-95 353.2 357 61.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.8e-95 352.8 327 62.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.5e-95 352.1 242 76.9
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 6.5e-95 352.1 311 63.7
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.1e-94 351.3 245 73.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.4e-94 350.9 242 75.6
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 4.2e-94 349.4 330 59.4
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.2e-94 349.4 325 59.1
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.2e-94 349.4 303 62.0
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 7.9e-93 345.1 330 60.6
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.3e-92 344.4 239 72.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.3e-92 344.4 241 74.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.8e-92 344.0 242 75.6
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.0e-92 343.2 354 61.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 3.9e-92 342.8 361 61.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 8.7e-92 341.7 246 72.0
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.1e-91 341.3 322 62.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.9e-91 340.5 242 72.7
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 4.3e-91 339.3 239 72.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.7e-91 339.0 242 70.7
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 3.7e-90 336.3 242 70.7
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.8e-90 335.9 243 71.6
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 4.8e-90 335.9 326 65.3
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.4e-89 334.3 362 57.5
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.4e-89 333.6 334 58.4
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.4e-89 333.6 330 62.7
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 4.5e-88 329.3 238 68.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.2e-87 327.0 362 58.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 5.0e-87 325.9 235 71.1
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-86 324.7 305 61.0
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-85 320.5 240 68.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 3.9e-84 316.2 324 60.8
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.0e-83 313.9 344 53.8
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.0e-83 313.9 345 53.0
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.7e-83 311.6 343 53.4
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.0e-80 303.9 213 73.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.4e-80 303.1 309 56.6
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.2e-77 294.7 327 52.0
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 8.2e-74 282.0 294 57.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.8e-73 280.8 223 60.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.5e-70 269.2 242 56.2
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.1e-57 228.4 243 50.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 9.8e-51 205.3 248 48.0
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.7e-50 204.5 249 47.8
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 6.3e-50 202.6 249 42.6
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.5e-46 190.7 229 44.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.2e-45 188.3 112 82.1
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.7e-40 170.6 237 43.0
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 7.8e-40 169.1 244 38.5
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-39 168.7 335 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 4.0e-36 156.8 207 41.1
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.4e-35 153.7 123 61.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.4e-35 153.7 89 80.9
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.2e-32 145.2 227 40.5
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.8e-29 134.0 240 33.3
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 5.2e-28 129.8 165 48.5
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 6.8e-28 129.4 215 32.6
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 2.9e-26 124.0 239 32.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.9e-25 121.3 220 38.2
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.4e-25 120.9 243 31.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.3e-23 115.2 162 42.0
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.9e-22 111.3 156 48.1
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 3.2e-17 94.0 243 35.0
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 6.6e-15 86.3 131 41.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.1e-14 85.5 211 33.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 5.6e-14 83.2 105 45.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 8.1e-13 79.3 105 44.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.4e-12 77.8 108 43.5
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 5.2e-12 76.6 124 39.5
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 6.8e-12 76.3 48 60.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 2.0e-11 74.7 179 34.1
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.6e-11 74.3 54 55.6
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.9e-10 70.9 134 36.6
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.9e-09 68.2 142 36.6
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 7.8e-08 62.8 53 54.7
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 5.6e-06 56.6 126 27.8


User provided reference genes

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