Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.1e-145 518.5 269 100.0
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.1e-124 450.3 267 84.6
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.4e-124 449.9 267 84.6
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.2e-122 442.6 268 82.1
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.9e-122 442.2 267 84.6
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 4.1e-121 438.3 267 83.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.0e-119 433.7 267 82.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-119 433.3 268 81.7
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.9e-119 431.8 267 82.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.5e-118 429.9 266 81.6
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.5e-118 427.2 267 81.6
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 8.1e-117 424.1 265 78.9
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 2.3e-116 422.5 267 79.8
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.1e-116 422.2 267 78.7
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 6.8e-116 421.0 248 82.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.8e-116 421.0 267 80.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 8.9e-116 420.6 267 77.9
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.4e-115 418.3 268 80.2
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 7.6e-115 417.5 267 77.2
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.3e-114 416.8 267 79.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.3e-114 416.8 268 79.1
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-114 416.8 255 82.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 2.9e-114 415.6 268 79.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.8e-114 415.2 267 78.3
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 6.4e-114 414.5 267 78.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.9e-113 412.9 269 78.4
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.4e-113 412.5 275 76.4
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.1e-113 411.8 267 76.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.2e-112 410.2 267 77.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.5e-112 408.7 267 77.9
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 6.0e-112 407.9 267 75.3
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 7.8e-112 407.5 304 70.7
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.0e-111 407.1 270 78.1
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.7e-111 406.4 267 74.9
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.7e-111 406.4 267 77.2
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 3.9e-111 405.2 253 80.2
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 5.1e-111 404.8 267 76.8
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.5e-110 402.5 252 79.8
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 5.6e-110 401.4 265 75.5
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 7.3e-110 401.0 249 78.7
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 7.3e-110 401.0 267 76.8
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.6e-109 399.8 257 79.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.8e-109 399.1 269 74.0
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.8e-109 399.1 267 74.2
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 2.8e-109 399.1 245 79.6
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 3.6e-109 398.7 287 71.4
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.7e-109 398.3 257 78.6
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.1e-108 397.1 265 77.0
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.1e-108 397.1 267 73.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.8e-108 396.4 247 78.5
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.8e-108 396.4 265 75.1
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 8.9e-108 394.0 267 73.0
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-107 393.3 268 72.8
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 4.4e-107 391.7 269 75.5
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 7.6e-107 391.0 257 74.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.3e-106 390.2 265 77.0
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 2.9e-106 389.0 243 79.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 2.9e-106 389.0 255 74.1
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 3.8e-106 388.7 267 74.5
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.8e-106 388.7 284 73.2
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 4.9e-106 388.3 256 75.8
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.4e-105 386.0 269 75.8
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 4.2e-105 385.2 246 75.6
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 5.4e-105 384.8 246 75.2
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 5.4e-105 384.8 232 82.3
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 7.1e-105 384.4 229 81.2
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.1e-105 384.4 262 75.6
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 9.3e-105 384.0 244 77.0
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.2e-104 383.6 234 81.6
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.1e-104 382.9 250 75.6
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.7e-104 382.5 234 81.2
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.5e-104 382.1 261 77.0
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 7.8e-104 380.9 247 74.9
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.7e-103 379.8 351 58.7
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.9e-103 378.6 265 72.8
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.1e-103 378.3 255 77.6
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 6.6e-103 377.9 244 77.9
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.1e-102 377.1 235 80.4
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.5e-102 376.7 337 62.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.5e-102 375.9 268 69.4
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.3e-102 375.6 231 81.0
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 4.3e-102 375.2 269 71.4
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 7.3e-102 374.4 249 74.7
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 7.3e-102 374.4 267 68.2
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 6.2e-101 371.3 249 74.7
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.4e-100 369.4 268 68.3
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 2.4e-100 369.4 235 76.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 5.3e-100 368.2 267 73.8
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.5e-99 366.7 222 80.2
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.4e-99 365.5 267 66.7
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.5e-99 365.2 213 83.6
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.5e-99 365.2 267 67.0
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.7e-98 363.2 249 69.9
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.2e-98 362.8 213 83.1
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.1e-97 360.5 265 66.4
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 2.4e-97 359.4 267 69.7
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.4e-97 359.4 267 65.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 4.2e-97 358.6 267 67.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 2.7e-96 355.9 227 78.9
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 7.9e-96 354.4 249 67.9
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 7.9e-96 354.4 247 69.6
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.0e-95 354.0 245 72.2
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.3e-95 353.6 301 60.8
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-95 353.6 248 69.0
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.3e-95 353.6 213 81.2
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-94 350.5 267 64.8
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.1e-94 350.5 247 67.2
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.9e-94 349.7 247 69.6
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-94 349.7 267 64.4
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 2.5e-94 349.4 267 64.8
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.5e-94 349.4 281 63.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.5e-94 349.4 267 64.8
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 4.3e-94 348.6 267 66.3
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 4.3e-94 348.6 280 63.9
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 4.3e-94 348.6 249 72.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 5.6e-94 348.2 268 66.0
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 5.6e-94 348.2 247 68.8
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.3e-93 347.1 267 64.4
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.8e-92 343.2 247 70.0
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.9e-92 341.3 256 70.7
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.5e-91 340.1 276 65.6
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 2.0e-91 339.7 255 67.8
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 4.5e-91 338.6 267 65.2
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.3e-90 337.0 267 64.4
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.1e-89 334.0 249 71.5
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.1e-88 329.7 201 80.1
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 7.9e-88 327.8 267 66.3
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 2.3e-87 326.2 212 76.4
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.6e-85 320.1 247 66.8
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-84 317.4 267 63.7
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-84 317.0 305 58.7
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 2.0e-83 313.2 238 65.5
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.0e-82 310.8 204 73.0
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.3e-82 310.5 245 63.7
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.2e-81 305.8 206 75.7
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.0e-79 300.8 186 81.7
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.4e-78 294.7 196 79.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.5e-75 287.0 243 59.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.6e-75 284.6 243 58.8
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.3e-74 283.9 202 69.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.5e-70 270.4 234 57.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 5.7e-70 268.5 256 56.6
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.3e-69 267.3 257 52.5
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.3e-69 267.3 252 54.4
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 4.5e-67 258.8 182 67.6
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.1e-65 254.2 139 87.8
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 9.4e-65 251.1 254 52.4
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 7.9e-64 248.1 147 85.7
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.4e-60 236.5 207 65.2
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.2e-55 218.8 187 64.7
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.3e-54 216.1 234 48.3
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 7.4e-54 214.9 244 48.0
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.2e-49 198.4 166 65.7
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.7e-45 187.2 122 77.0
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-43 181.0 104 82.7
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.1e-41 174.5 105 85.7
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.5e-41 173.3 148 65.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 7.2e-41 171.8 100 91.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.6e-35 154.1 178 53.9
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 4.7e-32 142.5 99 77.8
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.2e-30 137.9 243 36.6
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-26 124.4 118 54.2
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-26 124.4 118 54.2
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 3.3e-25 119.8 82 72.0
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.8e-23 114.0 66 78.8
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 8.3e-21 105.1 160 40.0
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.6e-19 99.4 85 63.5
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 1.3e-18 97.8 66 66.7
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.5e-17 93.6 68 70.6
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-15 87.8 64 71.9
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 7.5e-14 82.0 305 26.2
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.3e-09 65.5 61 49.2
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.6e-08 64.3 123 39.8
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.1e-07 60.1 38 78.9
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 1.5e-06 57.8 191 24.1
vmacro01747 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.9e-06 55.1 95 44.2


User provided reference genes

Program Settings