Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.9e-137 491.9 249 100.0
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.1e-83 313.9 252 66.3
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 4.3e-80 302.0 222 69.4
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.1e-78 297.4 222 69.8
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.4e-78 297.0 236 66.9
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 6.8e-78 294.7 234 67.1
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 6.8e-78 294.7 238 65.5
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 8.9e-78 294.3 215 69.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 8.9e-78 294.3 165 86.7
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.2e-77 293.9 165 86.1
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.4e-77 292.0 222 68.9
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 5.8e-77 291.6 225 68.0
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 7.6e-77 291.2 215 67.9
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 9.9e-77 290.8 225 66.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.8e-76 288.9 241 61.8
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 6.4e-76 288.1 165 83.0
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 6.4e-76 288.1 232 65.1
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 6.4e-76 288.1 163 84.7
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 1.1e-75 287.3 235 64.3
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 1.1e-75 287.3 241 61.4
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.4e-75 287.0 234 65.0
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 2.4e-75 286.2 220 69.1
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.4e-75 286.2 199 69.8
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 4.1e-75 285.4 164 81.7
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.1e-75 285.4 199 69.8
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.4e-75 285.0 224 67.9
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 7.1e-75 284.6 221 66.1
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.2e-74 283.9 240 61.2
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.2e-74 283.9 224 66.5
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 1.6e-74 283.5 207 69.1
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 2.7e-74 282.7 224 63.8
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 2.3e-73 279.6 218 67.4
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 2.3e-73 279.6 206 68.4
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 5.1e-73 278.5 197 68.0
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 6.6e-73 278.1 218 67.4
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.9e-72 276.6 234 62.8
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 2.5e-72 276.2 171 76.6
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 3.3e-72 275.8 194 69.1
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 3.3e-72 275.8 191 69.6
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 3.3e-72 275.8 231 63.2
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 4.3e-72 275.4 160 81.9
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 9.6e-72 274.2 176 72.7
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.6e-71 273.5 177 76.3
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 1.6e-71 273.5 231 60.6
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.1e-71 273.1 225 63.6
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 2.8e-71 272.7 176 72.7
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 3.6e-71 272.3 221 63.3
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 3.6e-71 272.3 206 65.0
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 6.2e-71 271.6 177 74.0
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 1.1e-70 270.8 177 74.6
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.4e-70 270.4 199 67.8
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 1.4e-70 270.4 199 67.8
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 1.8e-70 270.0 194 64.9
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 3.1e-70 269.2 212 62.3
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 4.0e-70 268.9 214 63.6
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 5.2e-70 268.5 161 75.8
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.5e-69 266.9 191 68.6
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.5e-69 266.9 224 62.1
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.0e-69 266.5 165 78.2
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 5.8e-69 265.0 206 64.1
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 7.6e-69 264.6 163 74.2
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 9.9e-69 264.2 184 69.6
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 2.2e-68 263.1 163 76.1
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 2.2e-68 263.1 165 73.9
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.2e-68 263.1 200 66.5
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.2e-68 263.1 200 66.5
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 2.2e-68 263.1 198 66.2
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.8e-68 262.3 165 75.2
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 4.9e-68 261.9 200 64.5
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 6.4e-68 261.5 165 73.3
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 1.1e-67 260.8 226 60.2
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.1e-67 260.8 198 65.2
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 1.4e-67 260.4 167 72.5
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 1.9e-67 260.0 220 58.6
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.2e-67 259.2 161 75.2
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.6e-66 256.9 164 71.3
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.6e-66 256.9 212 62.3
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 3.5e-66 255.8 164 72.0
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 3.5e-66 255.8 219 62.1
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 3.9e-65 252.3 159 74.8
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 3.1e-62 242.7 218 61.0
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 2.9e-60 236.1 140 75.7
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 5.4e-59 231.9 165 65.5
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 7.1e-59 231.5 163 64.4
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 1.6e-58 230.3 176 61.9
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.6e-58 230.3 176 61.9
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 1.6e-58 230.3 176 61.9
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 6.0e-58 228.4 176 61.4
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 7.9e-58 228.0 176 60.8
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 1.3e-57 227.3 161 65.8
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 1.3e-57 227.3 161 65.8
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.8e-57 226.9 177 59.9
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 6.7e-57 224.9 157 65.6
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 6.7e-57 224.9 161 64.0
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 6.7e-57 224.9 179 62.6
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.1e-56 224.2 173 61.8
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 1.6e-55 220.3 163 62.6
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.9e-52 209.5 145 69.0
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 4.6e-50 202.2 124 75.0
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 6.7e-49 198.4 165 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 3.4e-45 186.0 162 54.3
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.9e-43 180.3 160 53.8
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 4.2e-43 179.1 155 60.6
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.3e-41 174.1 112 74.1
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 3.9e-41 172.6 147 61.9
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 6.3e-39 165.2 136 64.0
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 4.1e-38 162.5 179 53.1
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 5.3e-38 162.2 111 70.3
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 4.5e-37 159.1 166 45.8
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 5.9e-37 158.7 106 72.6
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 5.9e-37 158.7 90 81.1
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 5.7e-32 142.1 127 54.3
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 2.5e-27 126.7 121 50.4
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 8.8e-25 118.2 196 32.1
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 1.5e-24 117.5 157 40.8
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 1.7e-20 104.0 53 88.7
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 2.2e-20 103.6 166 38.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.5e-19 99.0 59 78.0
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.1e-18 97.1 57 73.7
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 2.1e-18 97.1 54 77.8
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 2.1e-18 97.1 54 77.8
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 1.7e-12 77.4 67 55.2
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.2e-11 73.2 38 86.8
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 1.7e-07 60.8 114 39.5


User provided reference genes

Program Settings