Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 3.1e-170 601.7 297 100.0
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 1.2e-105 387.1 295 66.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 2.0e-100 369.8 296 61.8
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 4.4e-100 368.6 286 62.2
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.5e-95 353.6 298 60.1
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 4.3e-95 352.1 292 58.9
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.3e-94 350.5 277 64.6
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.6e-94 350.1 298 61.7
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 3.6e-94 349.0 292 60.6
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.8e-93 346.7 292 57.9
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.5e-92 343.6 292 58.6
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.6e-92 342.8 279 63.1
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 4.5e-92 342.0 300 60.3
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 4.5e-92 342.0 296 57.1
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 4.5e-92 342.0 292 60.3
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 7.6e-92 341.3 292 58.2
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 2.2e-91 339.7 281 59.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.9e-91 339.3 281 59.8
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 3.8e-91 339.0 296 58.8
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 4.9e-91 338.6 296 58.1
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.4e-90 336.3 293 59.0
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 2.4e-90 336.3 286 59.8
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.2e-90 335.9 281 58.7
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.3e-88 329.7 314 54.8
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.3e-88 329.7 314 54.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 8.7e-88 327.8 293 57.3
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 8.7e-88 327.8 290 58.6
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.1e-87 327.4 283 58.3
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.5e-87 327.0 288 57.6
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.3e-87 325.9 292 55.1
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.8e-86 322.8 292 54.8
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 3.7e-86 322.4 252 66.7
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 5.3e-85 318.5 278 60.1
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.2e-84 317.4 278 59.7
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 2.0e-84 316.6 286 53.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.3e-83 313.9 274 59.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.9e-82 310.1 230 65.7
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 2.5e-82 309.7 268 60.1
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 2.1e-81 306.6 294 53.7
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 3.5e-81 305.8 295 52.2
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 6.0e-81 305.1 243 61.3
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 6.0e-81 305.1 252 59.9
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 6.0e-81 305.1 285 52.6
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.8e-80 303.5 295 55.3
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 2.3e-80 303.1 195 76.4
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 3.9e-80 302.4 283 55.1
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 5.1e-80 302.0 286 55.2
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 5.1e-80 302.0 286 53.1
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 1.9e-79 300.1 286 54.9
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.5e-79 299.7 243 59.3
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 4.3e-79 298.9 289 53.6
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 5.6e-79 298.5 288 55.6
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 9.6e-79 297.7 277 53.8
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 9.6e-79 297.7 277 53.8
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.6e-78 297.0 379 47.0
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 2.8e-78 296.2 279 55.6
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.8e-78 296.2 275 56.0
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 3.7e-78 295.8 300 55.0
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 4.8e-78 295.4 285 53.0
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 1.4e-77 293.9 281 55.2
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.5e-76 290.4 234 62.0
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.7e-75 287.0 274 54.7
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.7e-75 287.0 301 52.5
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 2.2e-75 286.6 302 50.0
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 2.2e-75 286.6 274 54.7
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 2.5e-74 283.1 301 52.2
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 7.1e-74 281.6 292 49.7
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 7.1e-74 281.6 279 50.5
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.2e-73 280.8 279 51.6
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.0e-72 277.7 236 59.3
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 5.1e-72 275.4 296 52.7
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 1.9e-71 273.5 259 54.8
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.5e-71 273.1 300 48.7
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.3e-70 270.8 199 69.8
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.1e-69 267.7 218 60.6
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 4.1e-69 265.8 301 49.2
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 9.0e-69 264.6 293 46.1
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-68 263.8 291 45.4
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 1.5e-68 263.8 294 45.6
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 5.9e-68 261.9 295 45.1
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.7e-67 260.4 304 44.1
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.7e-67 260.4 299 45.2
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 8.5e-67 258.1 293 45.4
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 3.2e-66 256.1 320 45.6
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 4.2e-66 255.8 274 51.1
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 5.5e-66 255.4 306 44.1
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 5.5e-66 255.4 280 48.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 7.2e-66 255.0 389 39.8
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.6e-65 253.8 180 69.4
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 2.1e-65 253.4 198 63.6
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 3.6e-65 252.7 286 48.6
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 6.1e-65 251.9 299 44.8
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.8e-64 250.4 303 43.9
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.8e-64 250.4 303 43.9
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.0e-64 249.6 299 44.8
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 3.9e-64 249.2 305 43.6
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 3.9e-64 249.2 305 43.6
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 3.9e-64 249.2 300 44.7
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 3.3e-63 246.1 203 63.5
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 5.7e-63 245.4 264 48.1
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 6.3e-62 241.9 212 55.7
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 9.1e-61 238.0 217 54.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 1.5e-60 237.3 268 42.9
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.1e-58 231.1 220 54.1
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 9.4e-58 228.0 298 42.3
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 1.2e-57 227.6 174 66.1
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.6e-57 227.3 296 44.9
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 2.7e-57 226.5 276 42.8
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.9e-56 222.6 220 50.9
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 4.4e-55 219.2 264 46.2
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 5.5e-50 202.2 168 58.3
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 3.0e-48 196.4 293 39.9
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 9.7e-47 191.4 294 39.1
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 9.1e-45 184.9 178 52.2
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 4.2e-42 176.0 143 63.6
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 2.7e-41 173.3 175 49.7
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 6.1e-41 172.2 183 48.1
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.3e-38 164.5 185 45.9
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.0e-28 130.6 271 32.1
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 6.6e-27 125.6 82 63.4
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.0e-24 118.2 109 52.3
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 4.9e-22 109.4 250 30.4
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 2.5e-18 97.1 148 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 6.4e-14 82.4 122 36.9
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 3.2e-13 80.1 44 81.8
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 3.5e-12 76.6 105 37.1
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.1e-10 71.6 108 34.3
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 5.6e-10 69.3 50 62.0
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 2.3e-08 63.9 40 60.0


User provided reference genes

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