Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 5.7e-176 620.9 340 100.0
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.0e-104 383.3 319 72.4
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.3e-100 370.5 298 74.2
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.0e-100 369.4 299 71.2
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.3e-98 364.0 296 71.3
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.4e-97 360.5 301 69.4
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 6.9e-97 358.2 300 69.3
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.5e-96 357.1 305 71.5
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 5.8e-96 355.1 304 68.1
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 7.6e-96 354.8 293 69.6
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 9.9e-96 354.4 299 70.9
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.7e-95 353.6 303 70.3
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.7e-95 353.6 301 68.8
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 2.2e-95 353.2 297 70.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.9e-95 352.8 299 69.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.8e-95 352.4 296 69.3
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.8e-95 352.4 297 69.7
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 4.9e-95 352.1 303 70.0
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 8.4e-95 351.3 303 68.0
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-94 350.9 306 70.6
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.4e-94 350.5 298 69.8
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.9e-94 350.1 298 68.8
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.9e-94 350.1 299 68.9
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.2e-94 349.4 305 69.5
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 3.2e-94 349.4 296 68.9
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 3.2e-94 349.4 299 68.6
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 3.2e-94 349.4 304 69.4
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 5.4e-94 348.6 299 68.9
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 7.1e-94 348.2 299 67.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 9.3e-94 347.8 307 69.1
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.6e-93 347.1 299 70.6
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.1e-93 346.7 299 68.6
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.1e-93 346.7 301 66.8
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.7e-93 346.3 305 69.8
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.7e-93 346.3 299 70.2
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 3.5e-93 345.9 297 69.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 4.6e-93 345.5 296 69.6
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 7.9e-93 344.7 299 67.2
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.0e-92 344.4 296 69.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 2.3e-92 343.2 298 67.1
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.3e-92 343.2 297 69.7
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 3.0e-92 342.8 297 68.7
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 3.9e-92 342.4 308 67.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 3.9e-92 342.4 301 67.4
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 5.1e-92 342.0 308 67.2
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 5.1e-92 342.0 302 66.6
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 6.7e-92 341.7 299 66.9
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 6.7e-92 341.7 293 70.3
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.7e-92 341.3 302 69.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 8.7e-92 341.3 303 68.6
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 9.6e-91 337.8 297 68.0
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.3e-90 337.4 301 68.1
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.3e-90 337.4 306 64.4
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 2.8e-90 336.3 296 67.9
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 6.2e-90 335.1 299 68.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 6.2e-90 335.1 301 67.1
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.8e-89 333.6 298 68.5
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.8e-89 333.6 304 66.8
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.4e-89 333.2 298 68.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.4e-89 333.2 297 68.4
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 2.4e-89 333.2 300 66.7
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.1e-89 332.8 300 64.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.2e-88 330.9 301 65.1
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.5e-88 330.5 298 66.8
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.6e-88 329.7 297 66.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.4e-88 329.3 291 65.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.4e-88 329.3 302 66.2
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 3.4e-88 329.3 306 65.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 5.8e-88 328.6 302 66.2
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.6e-88 328.2 302 66.2
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.0e-87 327.8 301 65.8
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.3e-87 327.4 301 66.4
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.7e-87 327.0 296 66.6
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 2.2e-87 326.6 297 66.7
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.2e-87 326.6 298 66.4
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 4.9e-87 325.5 208 82.7
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-86 324.3 296 65.5
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.9e-86 323.6 303 64.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 4.2e-86 322.4 302 66.9
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.1e-85 320.1 304 63.8
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.7e-85 319.7 296 64.2
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.0e-85 318.5 314 64.0
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 6.0e-85 318.5 295 64.1
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 7.9e-85 318.2 298 62.4
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 7.9e-85 318.2 352 56.2
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 7.9e-85 318.2 305 64.3
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 7.9e-85 318.2 299 65.2
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.8e-84 317.0 299 66.2
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.8e-84 317.0 285 66.3
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.8e-84 317.0 298 62.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.8e-84 317.0 305 64.6
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.0e-84 316.2 310 62.6
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 5.1e-84 315.5 252 71.0
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 5.1e-84 315.5 303 62.7
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 5.1e-84 315.5 305 64.6
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 8.7e-84 314.7 252 70.6
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.7e-84 314.7 270 67.4
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.5e-83 313.9 303 61.1
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.5e-83 313.9 297 66.3
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 3.3e-83 312.8 298 61.7
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 3.3e-83 312.8 366 55.2
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 7.4e-83 311.6 305 63.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 9.6e-83 311.2 305 62.3
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.6e-82 310.5 300 62.7
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.6e-82 310.5 298 61.4
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.6e-82 310.5 298 61.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.6e-82 310.5 298 64.4
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 2.8e-82 309.7 296 61.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.8e-82 309.7 300 62.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 8.2e-82 308.1 280 68.2
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.4e-81 307.4 270 66.7
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.4e-81 307.4 270 66.7
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 2.4e-81 306.6 299 60.9
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.4e-81 306.6 293 61.8
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 5.3e-81 305.4 298 63.4
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.0e-79 301.2 192 81.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-79 300.8 195 79.5
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.2e-79 300.1 198 79.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 2.9e-79 299.7 297 60.6
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.5e-78 296.6 261 65.5
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 9.3e-78 294.7 295 63.4
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.8e-76 290.4 290 62.4
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 3.0e-76 289.7 307 59.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.5e-75 286.6 267 64.8
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.3e-74 284.3 384 50.3
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.2e-74 283.5 302 57.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.8e-74 282.3 203 73.4
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 8.2e-74 281.6 207 72.9
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.4e-73 280.0 273 62.3
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.1e-73 279.3 193 77.2
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 5.9e-72 275.4 181 78.5
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.3e-71 274.2 198 72.7
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.9e-71 273.1 214 70.6
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.4e-70 270.8 254 62.6
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.5e-70 270.0 360 49.2
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.2e-70 269.6 288 58.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.1e-69 266.9 260 60.0
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.1e-69 266.9 298 55.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 6.1e-69 265.4 302 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 8.8e-68 261.5 206 67.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.1e-67 261.2 283 58.7
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-66 257.7 259 60.2
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 6.3e-66 255.4 272 58.1
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.1e-57 228.0 317 50.2
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.0e-55 221.5 181 63.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.1e-53 213.8 220 56.8
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.4e-49 200.3 212 56.6
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-48 198.0 107 100.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.2e-45 188.0 192 55.7
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.1e-45 185.7 194 58.2
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 9.8e-35 151.8 212 44.3
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.7e-31 141.0 89 76.4
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 5.0e-31 139.4 289 37.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 8.6e-31 138.7 101 71.3
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.6e-24 117.9 206 39.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.3e-23 114.8 267 34.1
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 4.3e-22 109.8 142 49.3
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.1e-21 107.5 78 76.9
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.8e-21 107.1 63 84.1
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 8.0e-21 105.5 63 82.5
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 5.2e-20 102.8 87 59.8
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.4e-12 78.2 173 32.4
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 7.5e-11 72.4 59 66.1
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.9e-06 57.8 93 50.5


User provided reference genes

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