Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 7.5e-39 163.3 79 100.0
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.5e-10 68.6 45 73.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 4.3e-10 67.8 60 61.7
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-09 66.2 45 73.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-09 66.2 60 58.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.6e-09 65.9 60 58.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.8e-09 65.1 45 71.1
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.7e-09 64.7 45 68.9
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 3.7e-09 64.7 45 71.1
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 3.7e-09 64.7 45 71.1
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.8e-09 64.3 45 71.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 6.2e-09 63.9 45 71.1
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 8.1e-09 63.5 45 71.1
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 8.1e-09 63.5 45 68.9
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.1e-08 63.2 45 68.9
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.4e-08 62.8 45 68.9
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.4e-08 62.8 45 68.9
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.4e-08 62.8 44 70.5
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.4e-08 62.0 45 68.9
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.1e-08 61.6 45 66.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.1e-08 61.6 45 66.7
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 3.1e-08 61.6 44 70.5
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-08 61.6 61 54.1
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.0e-08 61.2 59 57.6
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.3e-08 60.8 45 68.9
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.3e-08 60.8 45 68.9
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.3e-08 60.8 45 64.4
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.3e-08 60.8 45 64.4
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 6.9e-08 60.5 45 68.9
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 6.9e-08 60.5 44 68.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 9.0e-08 60.1 45 64.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 9.0e-08 60.1 43 69.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 9.0e-08 60.1 42 71.4
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.2e-07 59.7 45 62.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.2e-07 59.7 60 55.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.2e-07 59.7 46 63.0
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.2e-07 59.7 46 65.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.5e-07 59.3 44 65.9
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.5e-07 59.3 45 66.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.6e-07 58.5 56 51.8
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.6e-07 58.5 45 62.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.4e-07 58.2 44 65.9
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 3.4e-07 58.2 44 63.6
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.4e-07 58.2 43 69.8
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 4.5e-07 57.8 73 45.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 4.5e-07 57.8 44 63.6
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.5e-07 57.8 45 64.4
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.8e-07 57.4 60 51.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 5.8e-07 57.4 45 62.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 5.8e-07 57.4 72 47.2
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 7.6e-07 57.0 44 65.9
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.6e-07 57.0 60 53.3
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 7.6e-07 57.0 45 62.2
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.6e-07 57.0 43 67.4
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 7.6e-07 57.0 44 61.4
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.9e-07 56.6 44 63.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.9e-07 56.6 54 53.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 9.9e-07 56.6 44 63.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 9.9e-07 56.6 43 67.4
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.3e-06 56.2 43 65.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.3e-06 56.2 45 62.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.3e-06 56.2 45 62.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.7e-06 55.8 60 51.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.7e-06 55.8 60 51.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.2e-06 55.5 44 61.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-06 55.5 44 63.6
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.2e-06 55.5 44 61.4
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.9e-06 55.1 43 62.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.9e-06 55.1 45 60.0
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.9e-06 55.1 44 63.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.8e-06 54.7 56 53.6
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.8e-06 54.7 44 59.1
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.8e-06 54.7 44 59.1
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 3.8e-06 54.7 44 63.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 3.8e-06 54.7 44 63.6
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 4.9e-06 54.3 45 60.0
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.9e-06 54.3 45 60.0
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.9e-06 54.3 45 60.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.4e-06 53.9 44 61.4
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 6.4e-06 53.9 47 55.3
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 8.4e-06 53.5 44 61.4
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 8.4e-06 53.5 44 61.4
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 8.4e-06 53.5 44 61.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 8.4e-06 53.5 46 54.3
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 8.4e-06 53.5 44 61.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 8.4e-06 53.5 44 61.4


User provided reference genes

Program Settings