Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 9.0e-65 250.4 151 100.0
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.7e-26 123.2 132 62.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 8.2e-26 120.9 137 54.7
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.9e-24 114.8 153 60.1
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 2.9e-23 112.5 150 48.0
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 7.2e-22 107.8 155 58.1
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.5e-19 100.1 154 55.2
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.1e-17 94.0 162 54.3
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 2.4e-17 92.8 160 49.4
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 1.2e-16 90.5 155 43.9
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.5e-16 88.6 149 42.3
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.7e-15 86.7 145 42.1
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.2e-15 86.3 136 50.0
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 3.8e-15 85.5 160 45.6
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 3.8e-15 85.5 160 45.6
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.0e-15 85.1 136 50.0
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 5.0e-15 85.1 130 45.4
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.5e-15 84.3 162 42.6
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 8.5e-15 84.3 138 52.9
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.1e-14 84.0 144 50.7
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.9e-14 83.2 135 39.3
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 2.5e-14 82.8 156 45.5
CDE03G0262 Ceratophyllum demersum HOM05D001201 ORTHO05D004477 2.5e-14 82.8 136 53.7
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.5e-14 82.8 158 52.5
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.5e-14 82.8 172 43.0
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.2e-14 82.4 162 40.7
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 3.2e-14 82.4 167 50.3
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 3.2e-14 82.4 165 48.5
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.5e-14 81.6 146 52.7
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 5.5e-14 81.6 133 45.1
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 7.2e-14 81.3 161 46.6
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 7.2e-14 81.3 148 41.2
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.2e-13 80.5 141 37.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.2e-13 80.5 164 44.5
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.6e-13 80.1 135 37.8
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 1.6e-13 80.1 167 46.7
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 3.6e-13 79.0 140 41.4
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.6e-13 79.0 164 51.2
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 6.1e-13 78.2 142 43.7
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 6.1e-13 78.2 143 37.8
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 6.1e-13 78.2 141 39.0
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.0e-12 77.4 167 49.7
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 1.0e-12 77.4 168 45.2
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.4e-12 77.0 151 52.3
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.4e-12 77.0 132 49.2
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 2.3e-12 76.3 160 48.1
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.3e-12 76.3 135 49.6
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.0e-12 75.9 141 38.3
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 3.0e-12 75.9 153 49.7
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.0e-12 75.9 141 38.3
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 3.0e-12 75.9 142 52.8
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 4.0e-12 75.5 159 41.5
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 4.0e-12 75.5 123 41.5
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 4.0e-12 75.5 142 38.0
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 5.2e-12 75.1 162 46.9
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 6.7e-12 74.7 159 45.3
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 8.8e-12 74.3 154 42.9
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 1.5e-11 73.6 181 38.7
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 1.5e-11 73.6 153 51.0
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.5e-11 73.6 167 48.5
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 1.5e-11 73.6 155 48.4
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 2.0e-11 73.2 160 41.2
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 2.0e-11 73.2 166 45.8
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 2.6e-11 72.8 162 41.4
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 4.4e-11 72.0 152 34.9
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 9.7e-11 70.9 145 45.5
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 9.7e-11 70.9 149 37.6
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 9.7e-11 70.9 145 40.0
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 2.2e-10 69.7 116 37.9
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 2.8e-10 69.3 162 48.8
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 3.7e-10 68.9 144 48.6
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 3.7e-10 68.9 150 36.0
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 3.7e-10 68.9 176 43.2
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 3.7e-10 68.9 142 36.6
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 3.7e-10 68.9 142 39.4
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 3.7e-10 68.9 144 35.4
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.7e-10 68.9 161 44.1
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 4.8e-10 68.6 193 30.1
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 6.3e-10 68.2 129 41.9
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 6.3e-10 68.2 172 39.0
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 6.3e-10 68.2 155 34.2
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 6.3e-10 68.2 171 34.5
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.1e-09 67.4 153 43.8
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 1.1e-09 67.4 166 33.7
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 1.1e-09 67.4 162 36.4
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.1e-09 67.4 117 41.9
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 1.8e-09 66.6 151 35.8
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 1.8e-09 66.6 140 34.3
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 1.8e-09 66.6 127 44.9
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 2.4e-09 66.2 126 41.3
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 2.4e-09 66.2 128 44.5
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.4e-09 66.2 130 36.2
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 3.1e-09 65.9 130 34.6
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 5.3e-09 65.1 173 43.4
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.3e-09 65.1 172 44.2
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.3e-09 65.1 172 44.2
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.3e-09 65.1 172 44.2
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 5.3e-09 65.1 162 43.8
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 7.0e-09 64.7 172 44.2
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 7.0e-09 64.7 136 39.0
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 1.6e-08 63.5 172 43.6
PSO447G0267 Papaver somniferum HOM05D055938 ORTHO05D050202 1.6e-08 63.5 170 41.2
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.6e-08 63.5 154 41.6
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 2.0e-08 63.2 150 37.3
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.0e-08 63.2 159 41.5
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 2.0e-08 63.2 140 33.6
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.7e-08 62.8 159 40.9
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 2.7e-08 62.8 144 32.6
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 3.5e-08 62.4 155 45.2
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 3.5e-08 62.4 170 34.7
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.5e-08 62.4 129 35.7
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.5e-08 62.4 147 34.0
EL10As13g24057 Beta vulgaris HOM05D031888 ORTHO05D004477 4.5e-08 62.0 184 38.6
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 4.5e-08 62.0 170 37.1
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.5e-08 62.0 128 35.9
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 5.9e-08 61.6 132 36.4
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 5.9e-08 61.6 131 48.1
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.0e-07 60.8 164 41.5
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 1.0e-07 60.8 144 47.2
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.0e-07 60.8 134 42.5
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.3e-07 60.5 127 34.6
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.7e-07 60.1 130 36.9
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.7e-07 60.1 155 36.1
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 2.2e-07 59.7 151 37.1
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 2.2e-07 59.7 134 35.8
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 2.2e-07 59.7 134 35.8
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 2.2e-07 59.7 155 46.5
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 3.8e-07 58.9 147 38.1
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 3.8e-07 58.9 47 63.8
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 3.8e-07 58.9 154 44.8
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 3.8e-07 58.9 172 37.8
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 5.0e-07 58.5 124 37.1
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 5.0e-07 58.5 148 33.1
PSO700G0164 Papaver somniferum HOM05D055938 ORTHO05D050202 5.0e-07 58.5 169 38.5
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 6.5e-07 58.2 132 37.9
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 8.5e-07 57.8 129 42.6
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 1.1e-06 57.4 119 37.0
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 1.1e-06 57.4 143 34.3
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.5e-06 57.0 163 30.7
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 1.9e-06 56.6 155 44.5
Gohir.D12G082301 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.9e-06 56.6 135 38.5
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 2.5e-06 56.2 149 41.6
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 2.5e-06 56.2 152 40.1
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 3.2e-06 55.8 162 40.1
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.2e-06 55.8 149 47.7
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.2e-06 55.5 162 34.6
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 4.2e-06 55.5 116 37.9
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 5.5e-06 55.1 141 34.0
Thhalv10019488m.g Eutrema salsugineum HOM05D009138 ORTHO05D011294 5.5e-06 55.1 45 62.2
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 5.5e-06 55.1 124 39.5
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 7.2e-06 54.7 162 30.2
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 7.2e-06 54.7 149 44.3
AT1G22470 Arabidopsis thaliana HOM05D009138 ORTHO05D011294 9.4e-06 54.3 39 64.1
Sp1g19950 Schrenkiella parvula HOM05D009138 ORTHO05D011294 9.4e-06 54.3 41 63.4


User provided reference genes

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