Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 0.0e+00 1421.8 705 100.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.0e-200 702.2 723 55.6
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-200 701.8 727 55.3
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.5e-199 700.3 739 54.3
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 7.1e-197 691.4 721 55.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 8.7e-195 684.5 713 55.3
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.8e-192 676.8 723 55.0
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.4e-190 668.3 722 53.9
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.4e-189 667.2 722 53.7
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 9.3e-189 664.5 715 53.0
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.5e-188 662.5 715 54.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.0e-187 659.4 715 54.1
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.6e-186 655.2 718 52.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 7.4e-186 654.8 711 52.3
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.4e-184 650.6 720 52.2
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.4e-184 650.6 720 52.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 4.5e-183 645.6 721 51.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.0e-182 644.4 719 52.4
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.9e-182 642.1 671 55.6
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.9e-181 640.2 716 51.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 3.2e-181 639.4 737 51.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 5.1e-179 632.1 713 50.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.5e-178 629.8 707 52.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.3e-178 629.4 732 51.2
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.3e-178 629.4 691 51.5
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.8e-176 623.6 677 53.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.8e-176 623.6 714 50.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.8e-176 623.6 792 48.1
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.0e-175 620.2 723 50.2
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.0e-171 607.8 714 50.8
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 6.7e-171 605.1 720 50.1
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.6e-169 600.5 716 48.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-168 597.4 729 49.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 6.9e-168 595.1 720 48.5
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.9e-168 595.1 716 47.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.2e-167 594.3 710 48.7
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.3e-166 590.9 723 50.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 6.5e-166 588.6 715 50.8
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 8.5e-166 588.2 722 49.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.4e-165 587.4 733 49.5
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.5e-165 586.6 721 49.4
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 7.9e-164 581.6 720 48.6
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.9e-163 579.3 776 46.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.6e-162 576.6 704 49.4
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.7e-161 573.9 720 49.0
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.8e-160 570.5 719 50.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.3e-158 564.3 728 47.7
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.2e-158 563.5 720 48.2
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.8e-158 562.8 717 47.7
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.4e-157 560.8 689 49.5
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.6e-156 557.4 705 49.1
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.7e-156 556.6 725 47.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 4.7e-156 555.8 736 47.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.8e-155 553.9 724 47.8
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.3e-155 553.5 724 47.7
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.9e-155 552.7 733 47.7
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.2e-155 552.4 695 48.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 5.2e-155 552.4 656 49.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 8.2e-153 545.0 720 49.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.6e-151 540.0 754 45.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.5e-151 539.7 725 48.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.5e-149 534.3 727 46.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 3.2e-149 533.1 659 48.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 6.7e-147 525.4 638 50.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.6e-146 523.5 690 47.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.8e-145 520.0 695 46.9
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 7.0e-144 515.4 723 46.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 7.0e-144 515.4 671 46.3
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 7.0e-144 515.4 673 47.4
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.9e-143 512.3 569 51.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 5.9e-143 512.3 707 45.8
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 8.5e-142 508.4 699 45.2
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 7.2e-141 505.4 610 50.2
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.1e-136 488.4 728 43.3
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.3e-134 484.6 722 42.4
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 4.2e-133 479.6 714 43.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.5e-133 478.4 640 47.0
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.0e-132 475.3 657 45.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 8.8e-131 471.9 744 41.9
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.2e-130 471.5 591 49.1
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.6e-130 470.3 724 41.9
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 7.5e-130 468.8 719 42.4
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.1e-128 463.4 705 42.6
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 7.0e-128 462.2 720 41.4
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.6e-127 461.1 721 42.2
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-125 454.5 725 41.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-125 454.5 725 41.0
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.3e-125 453.0 725 41.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.8e-124 450.3 717 41.6
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-124 450.3 717 41.6
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 8.0e-124 448.7 717 41.4
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.8e-123 447.6 657 45.7
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.8e-123 447.6 707 43.4
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.4e-122 443.4 722 40.4
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.4e-122 443.4 722 40.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 3.2e-120 436.8 714 41.0
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.1e-112 411.8 544 47.4
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.8e-108 397.1 719 38.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.3e-107 394.0 682 39.1
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 6.8e-107 392.5 503 48.3
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 8.6e-102 375.6 724 38.0
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.1e-100 370.9 637 39.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 6.0e-95 352.8 663 37.1
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.5e-93 347.4 703 37.1
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.3e-89 335.1 715 36.9
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-88 332.0 701 36.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-85 321.6 447 47.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 4.3e-85 320.1 451 42.6
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.9e-77 294.7 797 33.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-73 282.0 294 57.8
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.6e-71 273.5 200 67.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.0e-65 255.8 224 56.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 4.9e-65 253.4 718 30.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.2e-64 250.8 490 37.3
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.1e-63 248.1 551 33.9
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 7.9e-63 246.1 280 54.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.3e-62 244.6 639 32.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-58 231.9 327 41.9
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.5e-57 226.5 260 46.2
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.4e-54 218.8 591 33.0
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.7e-54 216.5 297 41.4
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.4e-51 208.0 193 63.2
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 4.5e-50 203.8 167 59.3
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.8e-46 189.5 275 48.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 9.1e-43 179.5 275 41.1
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.2e-42 179.1 130 67.7
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 9.7e-37 159.5 598 28.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.2e-36 158.3 297 42.1
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.8e-35 155.2 294 41.8
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.0e-29 135.2 119 68.1
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.7e-29 133.7 508 27.6
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.7e-26 124.8 167 49.7
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-23 115.9 75 77.3
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 5.2e-22 110.5 55 90.9
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 9.8e-21 106.3 73 68.5
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.1e-19 101.3 172 37.2
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-17 95.9 73 64.4
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-17 95.9 73 64.4
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-16 92.8 91 41.8
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.1e-16 92.8 91 41.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.2e-16 90.9 120 50.0
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.2e-15 89.4 51 82.4
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 2.1e-15 88.6 103 53.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 4.7e-15 87.4 63 65.1
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 4.7e-15 87.4 176 30.7
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.3e-12 79.3 123 47.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.7e-10 71.6 34 94.1
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-08 66.2 57 61.4
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 5.6e-08 63.9 62 51.6
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.0e-06 57.8 37 78.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 4.0e-06 57.8 58 56.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 5.2e-06 57.4 28 92.9
SHI16673 Sapria himalayana HOM05D004640 ORTHO05D005489 8.9e-06 56.6 29 89.7


User provided reference genes

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