Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 4.7e-53 211.8 202 100.0
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.2e-26 123.2 83 69.9
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 3.8e-26 122.5 83 68.7
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.2e-25 119.0 84 67.9
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 7.4e-22 108.2 82 61.0
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.4e-20 104.0 87 62.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.4e-20 104.0 84 59.5
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.8e-20 103.6 84 63.1
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.4e-20 103.2 84 60.7
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 2.4e-20 103.2 72 68.1
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 6.9e-20 101.7 90 58.9
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 9.0e-20 101.3 83 56.6
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 1.2e-19 100.9 85 58.8
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.5e-19 100.5 84 57.1
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.6e-19 99.8 75 64.0
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 2.2e-18 96.7 84 57.1
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.9e-18 96.3 85 55.3
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 3.8e-18 95.9 84 56.0
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 4.9e-18 95.5 82 57.3
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 4.9e-18 95.5 85 57.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 8.4e-18 94.7 85 54.1
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.4e-17 94.0 72 66.7
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.4e-17 94.0 85 54.1
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.5e-17 93.2 76 60.5
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.5e-17 93.2 88 52.3
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.5e-17 93.2 88 52.3
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 9.3e-17 91.3 82 56.1
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 1.2e-16 90.9 82 54.9
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.1e-16 90.1 86 55.8
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.1e-16 90.1 75 60.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 3.5e-16 89.4 77 55.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 6.0e-16 88.6 84 53.6
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 7.9e-16 88.2 85 54.1
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.8e-15 87.0 83 50.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 2.3e-15 86.7 80 53.8
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 2.3e-15 86.7 89 50.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.0e-15 86.3 89 49.4
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.9e-15 85.9 86 54.7
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.5e-14 83.2 94 57.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.3e-14 82.8 96 47.9
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.3e-14 82.8 86 51.2
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.3e-14 82.4 75 62.7
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 5.7e-14 82.0 84 52.4
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 9.6e-14 81.3 76 57.9
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.6e-13 80.5 85 52.9
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-13 80.5 82 51.2
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.8e-13 79.0 81 51.9
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 6.2e-13 78.6 83 50.6
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.4e-12 77.4 62 58.1
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.8e-12 77.0 62 56.5
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.8e-12 77.0 80 48.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.4e-12 76.6 86 50.0
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 3.1e-12 76.3 80 48.8
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.1e-12 75.9 62 56.5
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 5.3e-12 75.5 83 47.0
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 5.3e-12 75.5 90 48.9
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 6.9e-12 75.1 80 51.2
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 9.0e-12 74.7 84 47.6
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 9.0e-12 74.7 81 53.1
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 9.0e-12 74.7 85 47.1
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.0e-12 74.7 76 50.0
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.5e-11 73.9 85 44.7
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.5e-11 73.9 86 48.8
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 1.5e-11 73.9 87 40.2
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.5e-11 73.9 55 63.6
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.5e-11 73.9 85 42.4
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 2.0e-11 73.6 72 48.6
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 2.6e-11 73.2 95 41.1
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.6e-11 73.2 61 59.0
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.6e-11 73.2 80 47.5
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.6e-11 73.2 57 54.4
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 4.5e-11 72.4 85 48.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.5e-11 72.4 82 50.0
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 5.8e-11 72.0 52 69.2
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.0e-10 71.2 72 56.9
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.3e-10 70.9 55 60.0
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.3e-10 70.9 84 42.9
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.7e-10 70.5 48 64.6
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 2.2e-10 70.1 88 47.7
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.2e-10 70.1 83 43.4
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.2e-10 70.1 83 43.4
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.2e-10 70.1 84 46.4
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 2.2e-10 70.1 84 40.5
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 3.8e-10 69.3 85 44.7
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.8e-10 69.3 47 66.0
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 5.0e-10 68.9 82 45.1
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 5.0e-10 68.9 76 47.4
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 5.0e-10 68.9 84 47.6
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 6.5e-10 68.6 84 45.2
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.5e-10 68.6 54 57.4
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.5e-10 68.6 54 57.4
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 6.5e-10 68.6 70 51.4
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 6.5e-10 68.6 59 54.2
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 6.5e-10 68.6 87 40.2
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 8.4e-10 68.2 78 46.2
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.4e-10 68.2 47 63.8
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.1e-09 67.8 83 45.8
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.1e-09 67.8 48 62.5
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 1.4e-09 67.4 76 48.7
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.4e-09 67.4 82 45.1
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.9e-09 67.0 83 44.6
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.5e-09 66.6 59 54.2
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 3.2e-09 66.2 83 41.0
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 5.5e-09 65.5 57 52.6
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 5.5e-09 65.5 82 45.1
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 7.1e-09 65.1 59 49.2
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.6e-08 63.9 58 50.0
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 1.6e-08 63.9 84 40.5
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 2.1e-08 63.5 51 56.9
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.7e-08 63.2 59 52.5
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.7e-08 63.2 57 52.6
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.5e-08 62.8 46 58.7
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-08 62.8 59 52.5
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-08 62.8 46 58.7
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 3.5e-08 62.8 83 41.0
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 3.5e-08 62.8 46 58.7
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 3.5e-08 62.8 59 52.5
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.1e-08 62.0 83 38.6
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 6.1e-08 62.0 50 56.0
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 1.3e-07 60.8 83 39.8
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 1.3e-07 60.8 83 39.8
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.8e-07 60.5 82 41.5
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 1.8e-07 60.5 51 54.9
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.3e-07 60.1 87 43.7
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 2.3e-07 60.1 57 43.9
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.3e-07 60.1 83 36.1
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.3e-07 60.1 51 56.9
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.0e-07 59.7 86 40.7
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.0e-07 59.7 47 51.1
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 3.9e-07 59.3 80 41.2
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 3.9e-07 59.3 83 37.3
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 8.7e-07 58.2 54 46.3
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 8.7e-07 58.2 57 42.1
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 8.7e-07 58.2 52 50.0
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.5e-06 57.4 70 47.1
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.3e-06 56.2 55 45.5
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.3e-06 56.2 76 38.2
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.7e-06 55.5 75 42.7
ATR1136G201 Amborella trichopoda HOM05D003899 ORTHO05D068499 7.4e-06 55.1 57 47.4
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.4e-06 55.1 47 48.9
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 7.4e-06 55.1 82 37.8
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 7.4e-06 55.1 85 40.0
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.4e-06 55.1 76 38.2
HPP92_002045 Vanilla planifolia HOM05D003899 ORTHO05D003655 7.4e-06 55.1 56 39.3
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.7e-06 54.7 60 38.3
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 9.7e-06 54.7 57 40.4


User provided reference genes

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