Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.8e-95 350.9 181 100.0
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 8.8e-59 230.7 168 73.8
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.2e-49 199.5 182 63.7
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.1e-44 181.4 185 60.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.1e-37 160.6 185 54.6
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 7.5e-34 147.9 194 51.0
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 1.7e-33 146.7 190 50.5
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 3.7e-33 145.6 196 49.5
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 6.4e-33 144.8 175 51.4
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 9.2e-32 141.0 184 51.1
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 6.0e-31 138.3 177 50.3
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 6.0e-31 138.3 183 53.0
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 1.7e-30 136.7 174 54.0
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 6.6e-30 134.8 195 45.6
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.6e-28 129.0 198 41.9
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 8.9e-27 124.4 200 42.0
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.0e-26 123.2 156 47.4
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.4e-26 122.5 170 45.3
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.4e-26 122.1 155 47.7
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.3e-25 120.6 156 47.4
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.7e-25 120.2 171 49.1
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 1.1e-24 117.5 197 43.7
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.4e-24 117.1 195 45.6
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.6e-23 113.6 180 40.6
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 2.1e-23 113.2 191 44.5
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 2.7e-23 112.8 192 44.3
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.0e-22 110.9 212 41.0
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 3.9e-22 109.0 179 44.7
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 3.9e-22 109.0 189 42.3
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 6.6e-22 108.2 205 44.4
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.1e-21 107.5 196 42.3
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.5e-21 107.1 179 45.8
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.9e-21 106.7 143 44.8
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 3.3e-21 105.9 178 44.9
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.3e-21 105.5 188 45.7
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 5.6e-21 105.1 205 40.5
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 9.5e-21 104.4 188 39.9
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.2e-20 104.0 184 41.8
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 1.6e-20 103.6 165 47.3
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.6e-20 103.6 185 41.6
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 2.1e-20 103.2 150 42.7
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 2.8e-20 102.8 160 45.0
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.8e-20 102.8 179 44.7
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 4.7e-20 102.1 224 38.4
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 4.7e-20 102.1 198 40.4
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 6.2e-20 101.7 179 41.9
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.1e-19 100.9 177 44.6
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.1e-19 100.9 198 39.4
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 2.3e-19 99.8 181 42.0
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.3e-19 99.8 181 42.0
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.3e-19 99.8 189 38.6
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.0e-19 99.0 162 43.8
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.2e-19 98.6 181 42.5
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 6.8e-19 98.2 160 46.2
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 1.5e-18 97.1 180 40.0
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.5e-18 97.1 151 43.7
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 2.0e-18 96.7 162 43.8
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.0e-18 96.7 199 37.7
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 2.6e-18 96.3 143 44.8
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.4e-18 95.9 143 44.8
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 9.9e-18 94.4 184 38.0
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 2.2e-17 93.2 163 42.9
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 4.9e-17 92.0 223 35.9
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.4e-16 90.5 173 39.9
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 1.9e-16 90.1 160 41.9
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.4e-16 88.6 193 38.3
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 7.1e-16 88.2 172 41.9
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 9.2e-16 87.8 154 43.5
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.2e-15 87.4 137 43.8
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 6.0e-15 85.1 179 39.7
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.3e-14 84.0 208 35.6
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 3.9e-14 82.4 160 41.2
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 5.1e-14 82.0 174 37.9
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.5e-13 80.5 193 36.8
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.5e-13 79.7 216 34.7
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 3.3e-13 79.3 174 36.2
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.3e-13 79.3 231 32.5
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 7.3e-13 78.2 212 36.3
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 9.6e-13 77.8 150 37.3
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 2.8e-12 76.3 182 36.8
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 3.6e-12 75.9 144 43.1
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.6e-12 75.9 220 31.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 1.1e-11 74.3 190 40.0
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.4e-11 73.9 198 40.4
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 1.8e-11 73.6 195 39.0
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.8e-11 73.6 214 36.4
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.4e-11 73.2 102 50.0
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 3.1e-11 72.8 106 50.9
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 3.1e-11 72.8 203 36.0
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 4.0e-11 72.4 135 40.7
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 5.2e-11 72.0 200 36.5
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 2.0e-10 70.1 97 46.4
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.0e-10 70.1 203 34.5
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 2.6e-10 69.7 163 37.4
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 3.4e-10 69.3 153 35.3
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 7.6e-10 68.2 185 32.4
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 7.6e-10 68.2 172 36.6
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.6e-10 68.2 171 33.9
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 7.6e-10 68.2 173 35.8
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.9e-10 67.8 89 47.2
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 9.9e-10 67.8 173 36.4
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 9.9e-10 67.8 165 35.2
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 1.7e-09 67.0 211 36.0
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 2.9e-09 66.2 112 42.0
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 4.9e-09 65.5 87 50.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 6.4e-09 65.1 82 53.7
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 6.4e-09 65.1 145 38.6
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 6.4e-09 65.1 98 42.9
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 8.4e-09 64.7 205 35.6
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.1e-08 64.3 91 45.1
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 1.4e-08 63.9 88 46.6
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.9e-08 63.5 89 46.1
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 1.9e-08 63.5 182 33.5
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 1.9e-08 63.5 181 33.7
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 2.4e-08 63.2 79 46.8
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 2.4e-08 63.2 142 36.6
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.2e-08 62.8 67 53.7
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 3.2e-08 62.8 67 53.7
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 5.4e-08 62.0 172 37.8
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 5.4e-08 62.0 162 32.1
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 7.1e-08 61.6 164 35.4
Nitab4.5_0016059g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 7.1e-08 61.6 119 42.0
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.2e-07 60.8 80 45.0
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 1.6e-07 60.5 143 36.4
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 1.6e-07 60.5 66 56.1
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 1.6e-07 60.5 62 56.5
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 1.6e-07 60.5 143 36.4
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 2.1e-07 60.1 54 59.3
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 2.7e-07 59.7 62 56.5
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 2.7e-07 59.7 84 44.0
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 4.6e-07 58.9 78 51.3
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 6.0e-07 58.5 62 56.5
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 6.0e-07 58.5 151 33.8
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 6.0e-07 58.5 151 33.8
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 6.0e-07 58.5 54 59.3
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 7.8e-07 58.2 66 54.5
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 7.8e-07 58.2 66 54.5
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 7.8e-07 58.2 143 37.8
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 7.8e-07 58.2 191 35.1
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 1.0e-06 57.8 62 53.2
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 1.0e-06 57.8 88 47.7
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 1.3e-06 57.4 72 45.8
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 1.3e-06 57.4 87 46.0
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 1.3e-06 57.4 180 30.0
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 1.7e-06 57.0 62 54.8
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 1.7e-06 57.0 62 54.8
Thhalv10027223m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.7e-06 57.0 66 51.5
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 1.7e-06 57.0 165 36.4
Sp7g35360 Schrenkiella parvula HOM05D009364 ORTHO05D004599 1.7e-06 57.0 61 54.1
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 2.3e-06 56.6 83 48.2
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 3.0e-06 56.2 173 30.6
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 3.9e-06 55.8 65 50.8
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 6.6e-06 55.1 68 52.9


User provided reference genes

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