Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.4e-66 256.1 129 100.0
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.5e-60 236.1 129 91.5
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.3e-60 235.0 129 90.7
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 4.4e-60 234.6 129 90.7
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 5.7e-60 234.2 129 89.9
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 7.4e-60 233.8 129 90.7
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 3.7e-59 231.5 129 89.9
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 3.7e-59 231.5 129 89.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 6.3e-59 230.7 129 89.1
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 6.3e-59 230.7 127 89.0
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 89.1
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.8e-58 229.2 129 87.6
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.8e-58 229.2 129 89.1
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 4.1e-58 228.0 127 89.0
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 5.3e-58 227.6 129 87.6
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 5.3e-58 227.6 129 88.4
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 6.9e-58 227.3 119 92.4
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.1e-58 226.9 129 87.6
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.2e-57 226.5 129 87.6
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.5e-57 226.1 129 87.6
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 3.4e-57 224.9 127 87.4
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 4.5e-57 224.6 128 86.7
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 5.9e-57 224.2 129 87.6
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 5.9e-57 224.2 129 87.6
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 7.7e-57 223.8 129 85.3
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 1.0e-56 223.4 129 86.8
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.3e-56 223.0 129 86.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.7e-56 222.6 128 85.2
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.7e-56 222.6 129 86.0
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.2e-56 222.2 121 91.7
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 5.0e-56 221.1 119 90.8
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 6.5e-56 220.7 124 86.3
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 86.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 85.3
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 84.5
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-55 219.9 119 92.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 84.5
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.5e-55 218.8 123 85.4
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 82.9
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 82.9
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 82.9
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 2.5e-55 218.8 128 85.2
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 3.2e-55 218.4 119 89.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 84.3
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 82.9
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 81.4
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 83.7
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 9.4e-55 216.9 127 81.9
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-54 216.5 129 82.9
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.9
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.9
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.9
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 83.7
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 81.4
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 3.6e-54 214.9 119 88.2
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 83.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.2
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.9
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 4.7e-54 214.5 120 86.7
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 82.2
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.9
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 82.2
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.3e-53 212.2 119 87.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 80.6
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.3e-53 212.2 117 88.0
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 3.0e-53 211.8 127 79.5
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 3.0e-53 211.8 127 81.1
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 81.4
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 3.9e-53 211.5 127 81.1
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.8
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 78.3
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.0e-52 209.1 119 85.7
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 2.0e-52 209.1 127 81.9
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 79.1
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 81.4
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 79.1
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.6e-52 208.8 130 80.0
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 80.6
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 5.7e-52 207.6 127 80.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 5.7e-52 207.6 119 85.7
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 79.1
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.7e-51 206.1 127 78.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 78.3
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 81.8
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 81.8
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 83.2
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.8e-50 202.6 129 77.5
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 82.4
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 83.2
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 7.0e-50 200.7 129 79.1
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 9.1e-50 200.3 119 82.4
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.6e-49 199.5 119 80.7
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 81.5
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 80.7
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 79.0
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 7.7e-49 197.2 127 77.2
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.2e-48 195.7 128 77.3
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 2.9e-48 195.3 113 85.0
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 3.8e-48 194.9 128 73.4
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 5.0e-48 194.5 122 77.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 5.0e-48 194.5 129 75.2
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 5.0e-48 194.5 119 78.2
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.1e-47 193.4 107 88.8
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.5e-47 193.0 119 78.2
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.5e-47 193.0 148 68.2
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.9e-47 192.6 146 67.8
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 77.3
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-46 189.5 119 77.3
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 75.6
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 6.1e-46 187.6 127 74.8
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 8.0e-46 187.2 122 77.0
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 76.5
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 9.7e-44 180.3 133 73.7
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.2e-43 177.2 130 71.5
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.2e-43 177.2 122 72.1
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.1e-42 176.8 119 72.3
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-41 172.9 107 79.4
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.5e-41 171.8 121 71.9
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 5.9e-41 171.0 129 70.5
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 7.7e-41 170.6 105 80.0
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-36 156.0 96 80.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 9.8e-36 153.7 97 78.4
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 9.8e-36 153.7 129 59.7
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-35 152.9 95 78.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-35 152.9 96 79.2
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.8e-35 152.1 97 75.3
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.8e-34 149.4 100 75.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.0e-32 143.7 87 80.5
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 2.9e-32 142.1 113 57.5
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 2.9e-32 142.1 143 53.1
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 3.6e-30 135.2 141 50.4
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.0e-29 132.1 92 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 2.6e-28 129.0 99 57.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 4.9e-27 124.8 113 54.0
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-14 82.8 51 78.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.4e-10 70.1 39 82.1
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.5e-09 65.5 39 84.6
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 1.2e-06 57.0 66 40.9
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.6e-06 55.5 32 75.0


User provided reference genes

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