Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.9e-44 180.3 78 100.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 2.0e-31 138.7 69 85.5
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 3.4e-31 137.9 62 95.2
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.7e-30 135.6 60 95.0
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.7e-30 135.6 60 95.0
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.7e-30 135.6 62 93.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.8e-30 134.8 60 96.7
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 3.7e-30 134.4 70 82.9
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.8e-30 134.0 60 93.3
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 4.8e-30 134.0 65 89.2
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 6.3e-30 133.7 60 93.3
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 6.3e-30 133.7 66 83.3
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 8.3e-30 133.3 60 91.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 8.3e-30 133.3 60 95.0
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 8.3e-30 133.3 62 90.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.1e-29 132.9 60 91.7
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.1e-29 132.9 63 88.9
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-29 132.9 63 88.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-29 132.9 60 95.0
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.4e-29 132.5 60 93.3
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.4e-29 132.5 66 83.3
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.8e-29 132.1 60 93.3
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-29 132.1 60 93.3
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-29 132.1 60 93.3
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.8e-29 132.1 60 93.3
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.8e-29 132.1 63 87.3
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.4e-29 131.7 63 88.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.1e-29 131.3 63 88.9
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 4.1e-29 131.0 67 83.6
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 4.1e-29 131.0 60 91.7
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 4.1e-29 131.0 64 87.5
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.1e-29 131.0 60 91.7
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 4.1e-29 131.0 64 87.5
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 4.1e-29 131.0 60 91.7
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.1e-29 131.0 60 91.7
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 5.4e-29 130.6 60 95.0
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 7.0e-29 130.2 60 90.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 7.0e-29 130.2 66 81.8
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 7.0e-29 130.2 66 81.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.0e-29 130.2 60 90.0
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 7.0e-29 130.2 61 90.2
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 9.1e-29 129.8 60 90.0
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 9.1e-29 129.8 60 90.0
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 9.1e-29 129.8 60 90.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.2e-28 129.4 72 79.2
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 1.6e-28 129.0 59 91.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-28 129.0 60 90.0
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.0e-28 128.6 60 90.0
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.7e-28 128.3 60 88.3
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 2.7e-28 128.3 60 88.3
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.7e-28 128.3 60 88.3
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 2.7e-28 128.3 60 90.0
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 3.5e-28 127.9 63 85.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 88.3
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 88.3
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 88.3
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 3.5e-28 127.9 60 90.0
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 4.5e-28 127.5 60 85.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 4.5e-28 127.5 60 85.0
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 4.5e-28 127.5 64 87.5
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 4.5e-28 127.5 60 88.3
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 4.5e-28 127.5 60 88.3
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 4.5e-28 127.5 60 90.0
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 5.9e-28 127.1 60 88.3
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.9e-28 127.1 63 87.3
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 7.7e-28 126.7 63 87.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 7.7e-28 126.7 60 88.3
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 7.7e-28 126.7 60 86.7
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 7.7e-28 126.7 60 88.3
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.3e-27 125.9 62 83.9
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-27 125.6 59 91.5
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-27 125.6 59 91.5
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 2.2e-27 125.2 60 86.7
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.2e-27 125.2 58 91.4
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.2e-27 125.2 60 86.7
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.9e-27 124.8 60 85.0
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.9e-27 124.8 60 88.3
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 2.9e-27 124.8 60 86.7
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 3.8e-27 124.4 60 85.0
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.8e-27 124.4 60 85.0
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.0e-27 124.0 60 88.3
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 6.5e-27 123.6 60 86.7
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 6.5e-27 123.6 63 81.0
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.5e-27 123.6 63 81.0
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.5e-27 123.6 60 86.7
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.5e-27 123.6 63 81.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-26 122.9 64 79.7
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-26 122.5 59 89.8
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.9e-26 122.1 60 88.3
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.9e-26 122.1 60 88.3
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.9e-26 122.1 60 80.0
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 1.9e-26 122.1 60 85.0
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.2e-26 121.3 58 91.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 3.2e-26 121.3 60 83.3
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 3.2e-26 121.3 60 81.7
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 4.2e-26 120.9 61 83.6
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 4.2e-26 120.9 61 83.6
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 4.2e-26 120.9 63 77.8
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 5.5e-26 120.6 59 86.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 7.2e-26 120.2 60 83.3
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.2e-26 120.2 60 83.3
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.2e-25 119.4 69 71.0
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.6e-25 119.0 60 85.0
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.6e-25 119.0 71 71.8
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.6e-25 119.0 58 84.5
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.1e-25 118.6 63 81.0
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.1e-25 118.6 60 83.3
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.7e-25 118.2 60 81.7
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.7e-25 117.5 59 84.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.1e-25 117.1 60 81.7
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 6.1e-25 117.1 60 78.3
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 8.0e-25 116.7 60 78.3
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 8.0e-25 116.7 60 80.0
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.4e-24 115.9 63 76.2
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.4e-24 115.9 60 81.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.8e-24 115.5 66 69.7
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.8e-24 115.5 60 80.0
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.8e-24 115.5 70 71.4
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.3e-24 115.2 63 77.8
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.3e-24 115.2 67 73.1
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 3.0e-24 114.8 60 76.7
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-24 114.8 60 80.0
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.0e-24 114.4 60 78.3
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.0e-24 114.4 60 78.3
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 5.2e-24 114.0 60 75.0
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 5.2e-24 114.0 63 76.2
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 5.2e-24 114.0 63 76.2
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 5.2e-24 114.0 63 76.2
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 6.8e-24 113.6 60 80.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 8.8e-24 113.2 58 81.0
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 2.0e-23 112.1 60 78.3
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.0e-23 112.1 62 72.6
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.4e-23 110.9 63 74.6
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 5.7e-23 110.5 60 76.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 5.7e-23 110.5 60 76.7
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.5e-23 110.2 58 79.3
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 7.5e-23 110.2 69 65.2
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 9.8e-23 109.8 63 69.8
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 9.8e-23 109.8 60 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 1.7e-22 109.0 59 76.3
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.7e-22 109.0 63 73.0
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.2e-22 108.6 67 67.2
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 2.2e-22 108.6 57 75.4
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.8e-22 108.2 60 75.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 3.7e-22 107.8 59 74.6
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.7e-22 107.8 60 71.7
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 8.3e-22 106.7 58 74.1
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 8.3e-22 106.7 61 67.2
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.4e-21 105.9 60 70.0
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 1.4e-21 105.9 60 70.0
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.6e-20 102.4 57 73.7
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.7e-20 101.7 89 53.9
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.7e-20 101.7 58 70.7
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.5e-20 101.3 57 68.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.0e-19 99.8 51 72.5
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.8e-19 97.8 55 70.9
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.8e-19 97.8 55 70.9
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 5.0e-19 97.4 60 66.7
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 1.5e-18 95.9 62 59.7
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 1.9e-18 95.5 58 65.5
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.2e-18 94.4 58 67.2
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 5.5e-18 94.0 58 65.5
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.1e-17 92.0 60 65.0
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.1e-17 92.0 60 65.0
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.8e-17 91.7 60 63.3
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.2e-16 87.4 52 78.8
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.2e-16 87.4 52 78.8
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 6.8e-16 87.0 64 60.9
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 3.4e-15 84.7 59 59.3
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 6.3e-14 80.5 33 93.9
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 5.4e-13 77.4 32 90.6
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 5.4e-13 77.4 32 90.6
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.2e-13 76.6 42 78.6
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 2.9e-11 71.6 36 83.3
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 5.0e-11 70.9 34 76.5
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.6e-09 65.9 63 50.8
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 4.7e-09 64.3 53 54.7
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 3.1e-08 61.6 29 96.6
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.1e-08 61.6 63 47.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 7.5e-07 57.0 63 46.0


User provided reference genes

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