Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.9e-137 491.9 246 100.0
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-98 363.6 246 74.4
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-97 360.1 246 73.2
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.1e-91 339.0 254 65.7
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.3e-89 333.6 249 71.1
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.2e-88 328.6 246 68.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.5e-88 328.2 247 67.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-86 322.4 244 67.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.5e-85 320.1 244 66.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.6e-85 319.3 245 68.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.7e-85 318.2 245 68.2
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.7e-84 315.5 246 64.6
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.7e-84 315.5 246 64.6
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 8.2e-84 314.3 244 66.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.4e-83 312.8 244 65.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-82 310.5 248 66.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.2e-82 310.5 248 60.9
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.5e-82 308.9 245 62.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.5e-82 308.5 250 62.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 5.9e-82 308.1 250 62.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 5.9e-82 308.1 245 62.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.7e-82 307.8 247 63.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.5e-81 304.3 244 63.1
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-80 303.5 184 78.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.9e-80 303.1 244 63.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.6e-79 298.9 244 63.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.0e-78 297.4 247 62.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.3e-78 296.2 180 78.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.0e-78 295.8 244 62.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 5.2e-78 295.0 244 57.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.8e-78 294.3 244 61.5
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 8.8e-78 294.3 179 77.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-77 293.9 208 69.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-77 293.5 208 69.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.5e-77 291.2 229 65.5
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 7.5e-77 291.2 248 59.3
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 9.8e-77 290.8 247 59.9
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.3e-76 290.4 245 58.8
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.3e-76 290.4 253 60.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.8e-76 289.3 236 66.5
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-76 289.3 246 61.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.3e-76 288.1 177 78.0
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 8.3e-76 287.7 186 75.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.3e-76 287.7 246 58.5
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.4e-75 287.0 253 59.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.4e-75 287.0 241 61.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.8e-75 286.6 245 56.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.1e-75 285.8 229 64.2
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 4.1e-75 285.4 229 63.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.0e-75 284.6 246 58.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 9.1e-75 284.3 229 63.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 9.1e-75 284.3 229 63.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 9.1e-75 284.3 242 61.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.2e-74 283.9 220 64.1
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.6e-74 283.5 245 58.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.6e-74 283.5 245 62.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.7e-74 282.7 252 57.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 4.5e-74 282.0 240 58.3
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.7e-74 281.2 247 61.1
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-73 280.8 245 60.4
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.0e-73 280.8 247 59.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.3e-73 280.4 238 60.1
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.3e-73 280.4 244 57.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-73 280.0 229 62.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 59.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 59.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-73 279.3 245 60.4
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-73 279.3 245 60.4
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.9e-73 279.3 214 63.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.8e-73 278.9 246 59.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 6.5e-73 278.1 237 59.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.5e-73 277.7 244 60.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 8.5e-73 277.7 238 56.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.5e-73 277.7 252 58.3
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.5e-72 276.9 247 59.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.5e-72 276.9 241 57.7
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 254 56.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.2e-72 275.4 246 61.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.2e-72 275.4 233 60.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.5e-72 275.0 245 57.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.5e-72 275.0 245 57.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.2e-72 274.6 244 57.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.7e-71 272.7 212 65.6
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.6e-71 272.3 244 57.8
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 6.1e-71 271.6 256 56.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.0e-71 271.2 238 58.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-70 270.8 245 59.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.4e-70 270.4 175 72.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.8e-70 270.0 246 57.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.8e-70 270.0 245 59.6
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.8e-70 270.0 168 75.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.3e-70 269.6 256 55.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 6.8e-70 268.1 184 69.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.8e-70 268.1 246 58.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.8e-70 267.7 177 70.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 8.8e-70 267.7 246 57.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.8e-70 267.7 231 62.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.5e-69 266.9 248 56.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.0e-69 266.5 244 57.0
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.4e-69 265.8 247 54.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.4e-69 265.4 248 54.4
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.4e-69 265.4 250 54.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 5.7e-69 265.0 244 54.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 9.8e-69 264.2 245 59.2
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-68 263.8 256 55.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-68 263.5 178 69.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.2e-68 263.1 162 75.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.8e-68 262.7 248 53.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.3e-68 261.5 246 55.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 8.3e-68 261.2 243 54.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.1e-67 260.8 244 53.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.4e-67 260.4 213 58.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.4e-67 260.4 152 82.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-66 257.3 252 54.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.5e-66 255.4 246 54.9
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.9e-65 252.7 146 82.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-65 251.9 163 74.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.1e-64 250.8 246 54.5
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-64 250.8 233 54.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.5e-64 249.6 177 65.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.5e-64 249.6 245 52.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 7.3e-64 248.1 192 64.1
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 8.0e-63 244.6 246 53.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.0e-63 244.6 227 58.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.4e-62 243.8 246 53.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.8e-62 243.4 227 59.9
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 8.9e-62 241.1 176 62.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.5e-61 240.4 233 51.1
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.0e-61 240.0 233 54.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 3.4e-61 239.2 209 57.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.7e-61 238.4 204 58.3
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.7e-60 236.9 171 64.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.9e-60 235.3 227 54.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 5.4e-59 231.9 238 51.3
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.7e-57 226.9 244 52.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.0e-57 226.1 192 56.2
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-56 223.8 164 70.7
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.3e-56 222.2 183 57.4
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.6e-56 221.9 171 60.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-53 212.6 132 75.0
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.0e-49 201.1 162 62.3
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-47 193.7 146 67.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.9e-41 172.6 111 69.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.1e-35 154.5 110 63.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 7.1e-35 151.8 217 38.7
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.0e-34 148.7 166 49.4
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.3e-33 147.5 215 38.6
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.0e-30 136.0 214 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.5e-29 134.0 171 40.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 3.8e-28 129.4 201 36.8
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-27 126.3 76 76.3
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.3e-23 114.4 113 56.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.8e-20 102.8 86 57.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.4e-19 100.1 150 37.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-13 81.3 100 42.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.5e-08 63.5 53 50.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.5e-08 63.5 53 50.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.1e-07 60.5 56 53.6


User provided reference genes

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