Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.3e-227 790.0 397 100.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.1e-165 587.0 400 76.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.3e-151 538.9 457 63.0
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.6e-150 536.6 396 68.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.4e-149 532.7 401 68.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 3.7e-142 508.8 408 65.2
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.1e-141 505.8 396 65.7
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.2e-140 503.8 394 66.5
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 5.9e-140 501.5 397 64.7
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.1e-137 491.5 398 63.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.4e-136 490.3 396 64.1
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-136 490.3 398 62.6
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 3.0e-136 489.2 399 63.4
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 6.7e-136 488.0 395 65.1
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.1e-135 487.3 396 64.4
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.5e-135 486.9 397 64.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-135 486.1 400 63.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.7e-134 483.4 396 63.6
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.2e-134 483.0 398 63.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.3e-134 481.5 398 61.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.1e-133 480.7 399 63.2
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.9e-131 472.6 402 59.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.1e-130 470.7 401 61.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 7.2e-130 468.0 399 60.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.6e-129 466.8 400 60.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 3.9e-128 462.2 397 59.7
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.6e-127 459.5 398 59.5
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.3e-127 459.1 400 60.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 5.7e-127 458.4 395 62.3
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 7.4e-127 458.0 392 61.5
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 9.7e-127 457.6 396 60.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 6.3e-126 454.9 440 58.0
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 6.3e-126 454.9 392 60.5
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 8.2e-126 454.5 394 61.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.1e-125 452.2 394 60.9
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 7.0e-125 451.4 397 58.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.6e-124 450.3 399 59.6
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.0e-124 449.9 392 60.7
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.6e-124 449.5 396 59.6
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.5e-124 448.7 400 59.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 7.7e-124 448.0 400 58.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 7.7e-124 448.0 392 60.2
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.0e-123 447.6 399 58.1
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 4.2e-122 442.2 404 58.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.2e-122 442.2 404 58.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 7.2e-122 441.4 395 60.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.1e-121 439.9 399 58.6
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.7e-121 439.5 392 60.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.7e-121 439.5 402 58.0
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 6.1e-121 438.3 390 59.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 8.0e-121 438.0 402 57.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.0e-120 436.0 402 58.2
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.0e-120 435.6 404 58.2
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.2e-120 435.3 404 58.4
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 5.2e-120 435.3 400 57.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 8.8e-120 434.5 397 58.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-119 433.7 405 58.3
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-119 433.7 405 58.3
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 2.6e-119 433.0 403 58.6
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 5.7e-119 431.8 405 57.3
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 6.3e-118 428.3 400 58.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 8.3e-118 427.9 401 58.4
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.8e-117 426.8 396 58.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.1e-117 426.0 401 57.6
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.1e-117 425.6 397 58.2
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.2e-116 424.1 383 60.8
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.7e-116 422.9 404 58.4
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.2e-115 419.9 397 57.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.5e-114 417.2 466 52.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 4.2e-114 415.6 385 56.6
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 9.4e-114 414.5 388 55.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.7e-113 412.9 400 55.5
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-112 410.6 425 55.3
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.4e-112 410.6 390 56.4
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.4e-112 410.6 390 55.1
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.0e-112 409.5 400 56.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.5e-111 407.1 388 56.2
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.7e-110 403.7 392 56.1
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 7.0e-109 398.3 399 54.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-108 397.5 371 59.3
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.5e-108 395.6 411 53.5
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 4.5e-108 395.6 428 52.3
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.9e-107 392.9 400 52.8
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.6e-107 391.7 395 53.7
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.6e-107 391.7 389 53.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.6e-107 391.3 388 53.4
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.1e-106 391.0 401 52.9
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.5e-106 387.9 395 53.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.8e-105 386.3 389 53.2
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.8e-104 381.7 389 55.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 8.9e-104 381.3 397 52.6
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.2e-103 380.9 398 54.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.2e-103 380.9 403 49.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 9.8e-103 377.9 396 52.8
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.3e-102 377.5 388 54.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.4e-101 373.2 394 54.8
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.2e-100 370.9 388 54.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.7e-100 369.8 452 46.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.5e-100 369.4 388 54.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.9e-99 366.3 298 62.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.9e-98 363.6 388 54.1
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.3e-98 362.8 395 49.9
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 2.1e-97 360.1 388 53.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.2e-94 350.1 398 51.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 8.0e-89 331.6 273 60.1
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 5.2e-88 328.9 313 58.1
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-86 324.3 371 49.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.4e-85 320.9 397 45.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.2e-84 317.8 390 46.4
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.8e-84 315.1 266 59.8
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.6e-81 306.2 403 47.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.8e-79 298.9 397 46.6
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 9.9e-79 298.1 416 42.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.1e-77 292.0 410 44.4
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.6e-76 290.8 349 49.0
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 4.6e-76 289.3 242 63.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.6e-73 279.6 434 40.1
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 6.2e-73 278.9 460 37.6
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 3.8e-70 269.6 397 40.8
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.0e-68 262.3 276 47.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 5.1e-67 259.2 380 44.2
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.3e-59 233.8 181 64.1
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-57 227.3 169 60.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.8e-51 207.6 296 44.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 9.0e-48 195.3 218 51.4
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 3.5e-44 183.3 155 56.8
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.7e-43 179.1 174 51.7
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.5e-42 177.9 169 53.3
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.1e-36 157.5 110 66.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.5e-36 156.8 194 50.0
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 4.8e-33 146.4 168 49.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 5.5e-29 132.9 257 35.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.7e-28 130.6 96 67.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-23 114.0 173 43.9
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.8e-22 110.2 114 50.9
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 4.7e-20 103.2 151 39.1
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 4.7e-12 76.6 65 55.4
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 8.0e-12 75.9 65 55.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 4.0e-11 73.6 82 47.6
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-10 72.0 50 72.0
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-10 72.0 50 72.0
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.8e-09 66.6 45 71.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.9e-07 59.7 169 34.3
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.2e-06 57.8 106 45.3
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.2e-06 57.8 106 45.3


User provided reference genes

Program Settings