Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.2e-155 551.2 260 100.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.4e-118 429.1 240 85.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.8e-114 415.6 237 82.3
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.0e-108 395.6 240 77.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.2e-106 387.9 240 75.4
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.9e-105 384.4 240 76.7
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 8.7e-100 367.5 230 75.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-99 366.7 230 75.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.3e-99 364.4 240 72.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.8e-98 361.7 230 73.9
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.9e-97 357.8 232 72.4
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 7.6e-96 354.4 240 68.8
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.7e-95 353.2 237 72.6
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 3.8e-95 352.1 234 72.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.4e-95 351.3 232 72.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.2e-94 349.0 230 72.6
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.2e-94 349.0 230 73.0
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-93 347.1 238 69.3
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-93 347.1 238 69.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.6e-93 346.7 242 67.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.1e-93 346.3 228 72.8
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.1e-93 346.3 232 70.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.7e-93 345.9 226 72.6
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.5e-93 345.5 226 72.1
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 6.0e-93 344.7 232 71.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.0e-92 344.0 232 70.7
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.5e-91 340.1 230 71.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 4.3e-91 338.6 230 70.0
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 5.6e-91 338.2 240 67.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.2e-90 334.7 230 70.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.1e-89 334.0 230 69.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.4e-89 333.6 230 69.6
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 3.1e-89 332.4 230 67.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.0e-89 332.0 230 70.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 6.9e-89 331.3 240 65.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 6.9e-89 331.3 230 69.1
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 9.0e-89 330.9 230 67.8
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.5e-88 330.1 230 69.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.5e-88 330.1 240 65.8
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.0e-88 329.7 240 63.8
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.0e-88 329.7 244 67.2
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 3.4e-88 328.9 255 60.8
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.4e-88 328.9 230 68.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 7.6e-88 327.8 230 67.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.3e-87 327.0 232 69.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.7e-87 326.6 230 69.1
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-87 326.6 243 63.4
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-87 326.2 228 68.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.2e-87 326.2 230 64.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.8e-87 325.5 227 69.2
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.9e-87 325.1 232 68.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 6.4e-87 324.7 230 65.7
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 8.4e-87 324.3 230 66.1
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.4e-86 322.8 232 67.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-86 322.8 232 66.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-86 322.8 227 69.2
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.2e-86 322.4 230 66.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 4.2e-86 322.0 230 66.1
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.5e-86 321.6 227 69.2
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.1e-86 321.2 227 69.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.3e-86 320.9 232 65.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 9.3e-86 320.9 232 65.9
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 9.3e-86 320.9 257 63.8
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.2e-85 320.5 230 65.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.1e-85 319.7 232 65.9
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.7e-85 319.3 240 65.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.7e-85 319.3 242 64.5
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 6.0e-85 318.2 240 65.4
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.3e-84 317.0 230 67.4
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 3.0e-84 315.8 230 67.4
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 3.0e-84 315.8 247 64.0
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.9e-83 313.2 242 63.2
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.5e-83 312.8 242 62.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 3.3e-83 312.4 244 61.5
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 4.3e-83 312.0 242 62.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.6e-83 311.6 240 63.3
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.6e-82 310.1 228 66.7
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.1e-82 309.7 235 64.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 6.2e-82 308.1 241 62.2
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.4e-81 306.2 255 60.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-81 305.8 232 63.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.9e-81 304.7 240 62.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 6.9e-81 304.7 171 76.6
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-80 303.1 232 62.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.0e-79 300.8 234 63.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.7e-79 300.1 232 62.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.4e-78 297.0 206 70.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 4.2e-78 295.4 239 60.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 5.5e-78 295.0 232 62.1
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 6.0e-77 291.6 234 62.0
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-76 290.4 232 62.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-76 289.3 232 62.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 8.7e-76 287.7 229 62.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 8.7e-76 287.7 234 61.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 8.7e-76 287.7 230 62.6
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.1e-75 287.3 234 60.7
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-75 286.6 232 61.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-75 285.4 230 62.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.7e-75 284.3 227 62.1
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.3e-74 283.9 232 60.3
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-74 283.9 241 58.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.6e-74 283.5 231 58.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.1e-74 283.1 230 60.4
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.8e-74 282.7 230 62.2
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 3.7e-74 282.3 232 60.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.7e-74 282.3 232 61.2
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.7e-74 282.3 230 60.0
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.8e-74 282.0 234 60.3
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 4.8e-74 282.0 259 54.4
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 6.9e-73 278.1 232 59.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 6.9e-73 278.1 232 59.5
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 6.9e-73 278.1 232 59.5
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.2e-72 277.3 204 64.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 5.9e-72 275.0 224 60.7
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 5.9e-72 275.0 231 58.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-71 274.2 224 60.3
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-70 270.4 230 60.4
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-70 270.4 232 57.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.9e-70 270.0 195 63.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 2.5e-70 269.6 165 73.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 5.5e-70 268.5 224 59.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.6e-69 266.9 240 54.6
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-68 263.8 258 52.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.0e-68 262.7 225 58.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.7e-68 261.2 230 59.1
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.5e-67 260.4 205 62.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-65 254.2 195 65.1
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.4e-65 253.1 413 38.7
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 6.9e-65 251.5 145 75.9
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 8.5e-63 244.6 251 51.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-62 243.8 257 52.5
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 7.9e-61 238.0 139 74.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.8e-60 236.9 209 60.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.0e-60 236.1 175 60.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.0e-59 233.4 241 50.2
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 4.8e-58 228.8 306 43.1
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.9e-56 221.9 172 59.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.3e-52 209.9 168 60.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 3.9e-52 209.1 124 72.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 6.7e-52 208.4 313 41.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.5e-51 207.2 164 52.4
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.8e-50 202.2 295 41.4
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.2e-45 187.6 177 52.0
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.0e-43 180.3 128 61.7
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.8e-39 166.0 88 81.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.7e-32 141.7 141 46.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-31 141.0 122 57.4
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-31 141.0 247 32.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.2e-26 123.6 72 72.2
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.1e-22 111.3 123 48.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.2e-19 101.3 215 34.0
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.2e-16 91.3 106 53.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 7.3e-14 82.0 139 40.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 7.3e-14 82.0 139 40.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-10 70.5 112 42.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.9e-10 69.3 101 48.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.1e-08 63.9 33 75.8


User provided reference genes

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