Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.4e-130 468.0 241 100.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 9.5e-85 317.4 235 71.1
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 1.2e-84 317.0 234 70.9
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 8.4e-81 304.3 234 67.9
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 3.3e-77 292.4 240 65.0
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 6.2e-76 288.1 231 66.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 6.8e-75 284.6 229 65.9
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 6.8e-75 284.6 236 62.7
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 6.8e-75 284.6 228 67.1
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 2.6e-74 282.7 229 63.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 1.7e-73 280.0 230 63.9
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 1.4e-72 276.9 231 65.8
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 5.4e-72 275.0 233 63.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 9.3e-72 274.2 234 63.7
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 3.0e-70 269.2 238 60.5
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 2.1e-68 263.1 234 62.4
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 3.6e-68 262.3 233 63.5
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 3.1e-67 259.2 236 60.2
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 6.9e-67 258.1 229 61.1
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 2.7e-63 246.1 216 62.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 1.0e-62 244.2 233 58.8
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 1.3e-62 243.8 242 56.2
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 2.3e-62 243.0 231 56.3
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.9e-62 242.3 231 58.9
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 1.1e-61 240.7 233 58.4
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 5.6e-61 238.4 234 56.4
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 5.6e-61 238.4 233 58.4
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 7.4e-61 238.0 230 55.2
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 4.8e-60 235.3 232 57.8
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 2.4e-59 233.0 234 58.5
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 2.0e-58 229.9 229 56.3
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 4.5e-58 228.8 231 57.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 4.5e-58 228.8 231 57.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 7.6e-58 228.0 237 56.5
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.7e-57 226.9 231 55.0
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 2.2e-57 226.5 228 56.6
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 2.9e-57 226.1 227 55.5
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 8.4e-57 224.6 242 54.5
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 1.1e-56 224.2 242 54.5
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.1e-56 224.2 218 56.0
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 1.4e-56 223.8 234 57.3
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 1.9e-56 223.4 234 54.3
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.9e-56 223.4 231 56.3
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 1.9e-56 223.4 231 54.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 2.4e-56 223.0 231 52.8
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 4.2e-56 222.2 231 52.8
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 7.1e-56 221.5 242 53.7
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 9.3e-56 221.1 242 53.3
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 1.2e-55 220.7 231 55.0
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 6.0e-55 218.4 232 52.6
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.0e-54 217.6 236 53.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.0e-54 217.6 228 53.5
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 2.3e-54 216.5 233 54.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 2.3e-54 216.5 229 53.7
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 8.7e-54 214.5 226 53.1
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 1.1e-53 214.2 240 50.8
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 1.9e-53 213.4 358 39.4
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 2.5e-53 213.0 234 54.3
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 5.6e-53 211.8 229 54.6
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 9.6e-53 211.1 229 53.7
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 1.6e-52 210.3 206 55.3
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 1.6e-52 210.3 228 53.1
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.1e-52 209.9 239 49.8
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 6.9e-51 204.9 226 50.9
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.2e-50 204.1 237 52.3
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 3.4e-50 202.6 238 52.9
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 1.0e-49 201.1 227 50.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.0e-49 201.1 241 49.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 1.0e-49 201.1 226 50.0
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.2e-49 199.9 191 58.1
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 3.8e-49 199.1 231 50.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 6.5e-49 198.4 233 48.5
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 8.4e-49 198.0 229 49.8
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 1.4e-48 197.2 233 48.5
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 2.5e-48 196.4 241 46.9
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 3.2e-48 196.1 238 48.3
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 4.2e-48 195.7 241 46.5
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 7.1e-48 194.9 233 47.6
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 9.3e-48 194.5 229 49.8
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.1e-47 193.4 229 44.1
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.7e-47 193.0 183 58.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.7e-47 193.0 229 50.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 3.5e-47 192.6 238 47.9
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 3.5e-47 192.6 241 47.7
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 7.9e-47 191.4 232 48.3
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 7.9e-47 191.4 251 45.0
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 1.3e-46 190.7 244 45.9
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.8e-46 190.3 169 60.9
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 3.0e-46 189.5 242 46.7
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 3.0e-46 189.5 242 46.7
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 3.0e-46 189.5 242 46.7
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 6.7e-46 188.3 242 47.1
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 4.3e-45 185.7 180 56.7
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 1.3e-44 184.1 230 47.0
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.4e-43 179.9 232 47.0
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 3.4e-42 176.0 295 42.0
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 6.1e-39 165.2 163 55.8
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.2e-36 156.8 232 43.5
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 8.2e-36 154.8 164 53.0
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.3e-33 147.5 179 47.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 2.1e-31 140.2 168 45.8
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.9e-30 136.0 230 37.8
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.5e-29 134.0 106 65.1
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 3.3e-21 106.3 88 62.5
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 7.4e-21 105.1 161 38.5
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 2.2e-17 93.6 86 60.5
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 6.5e-17 92.0 100 51.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 6.5e-17 92.0 161 36.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 5.5e-16 89.0 125 44.8
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 3.1e-11 73.2 52 71.2
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.9e-08 63.9 53 64.2
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-08 63.5 71 52.1
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 7.2e-08 62.0 85 42.4


User provided reference genes

Program Settings