Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.9e-159 564.7 343 100.0
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.7e-87 327.0 236 75.0
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.5e-87 325.1 194 87.6
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 9.7e-83 311.2 242 67.8
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.2e-71 273.5 235 61.3
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 2.9e-71 273.1 236 64.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 8.5e-71 271.6 237 61.6
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.2e-69 267.7 236 61.9
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 6.1e-69 265.4 235 59.6
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 2.3e-68 263.5 237 61.6
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 3.0e-68 263.1 235 59.6
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 4.0e-68 262.7 243 60.9
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 4.0e-68 262.7 236 59.7
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.2e-67 261.2 264 56.8
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 2.0e-67 260.4 236 60.2
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.6e-67 260.0 236 60.2
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 3.4e-67 259.6 195 71.8
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 4.4e-67 259.2 236 58.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 2.2e-66 256.9 193 69.9
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.8e-66 256.5 232 59.5
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 4.8e-66 255.8 188 70.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 4.8e-66 255.8 232 59.5
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.3e-66 255.0 232 59.5
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 1.1e-65 254.6 236 58.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.6e-64 250.8 220 60.0
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.0e-64 250.4 236 60.2
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.7e-64 250.0 236 56.8
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 3.5e-64 249.6 237 57.4
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 4.5e-64 249.2 234 59.0
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.0e-63 248.1 234 58.5
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.3e-63 247.7 244 58.6
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 2.3e-63 246.9 237 57.8
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.9e-63 246.5 235 54.9
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.9e-63 246.5 237 57.4
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.9e-63 246.5 230 57.4
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 3.8e-63 246.1 236 57.6
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 5.0e-63 245.7 236 57.6
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 5.0e-63 245.7 244 59.0
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 5.0e-63 245.7 236 56.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 8.6e-63 245.0 235 59.6
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 1.1e-62 244.6 237 57.4
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 3.3e-62 243.0 237 59.9
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 5.5e-62 242.3 235 56.2
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 7.2e-62 241.9 244 57.0
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 8.0e-61 238.4 235 54.9
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.0e-59 233.8 238 56.3
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.6e-59 233.4 235 55.3
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 4.4e-59 232.6 235 54.9
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 5.7e-59 232.3 241 55.2
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 9.8e-59 231.5 183 65.0
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.3e-58 231.1 239 54.4
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 4.9e-58 229.2 236 53.4
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 2.4e-57 226.9 248 54.8
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 3.2e-57 226.5 231 52.4
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 4.1e-57 226.1 239 53.1
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 9.2e-57 224.9 240 52.1
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.6e-56 224.2 231 52.8
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 2.0e-56 223.8 236 56.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.3e-55 221.1 239 49.4
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.9e-54 217.2 237 51.1
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 2.5e-54 216.9 237 51.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 4.3e-54 216.1 238 50.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.6e-53 214.2 279 47.3
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 4.7e-53 212.6 248 52.4
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.8e-52 210.7 232 50.9
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.3e-52 210.3 241 51.5
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.3e-52 210.3 238 49.6
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 5.8e-51 205.7 235 48.9
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 9.8e-51 204.9 140 75.0
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.4e-49 201.1 238 48.7
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.9e-49 200.7 238 48.7
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.4e-49 199.1 235 47.7
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 4.6e-48 196.1 240 50.4
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.0e-48 195.7 245 51.0
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.0e-47 194.9 240 49.6
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.7e-47 194.1 259 44.0
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.0e-47 193.4 236 48.3
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 8.6e-47 191.8 239 48.5
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.1e-46 191.4 237 47.7
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 1.5e-46 191.0 239 46.9
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.3e-46 189.5 236 46.6
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 5.6e-46 189.1 238 47.1
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 2.1e-45 187.2 230 46.1
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 3.6e-45 186.4 240 46.2
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 4.7e-45 186.0 231 48.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 4.7e-45 186.0 238 45.0
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.0e-45 185.3 237 48.1
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.1e-44 184.9 156 63.5
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.0e-43 180.6 187 56.1
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.0e-43 180.6 322 39.1
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 3.4e-43 179.9 241 46.1
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.3e-42 177.9 238 45.4
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.7e-42 177.6 238 45.4
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.7e-42 177.6 238 45.4
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 3.7e-42 176.4 242 43.0
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 6.4e-42 175.6 242 43.0
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.9e-41 174.1 238 43.7
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.9e-41 174.1 238 43.7
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 5.4e-41 172.6 173 53.2
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 2.7e-40 170.2 232 42.7
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 4.6e-40 169.5 141 61.0
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 8.9e-36 155.2 235 44.7
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 8.9e-36 155.2 238 43.3
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.7e-34 149.8 127 59.8
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 4.1e-33 146.4 181 48.6
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.4e-28 130.6 289 37.4
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 3.1e-28 130.2 114 62.3
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.9e-23 113.2 104 60.6
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 4.8e-21 106.3 133 45.9
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 6.9e-20 102.4 168 35.1
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 9.0e-20 102.1 102 54.9
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 1.3e-15 88.2 73 61.6
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.3e-15 88.2 243 30.0
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 8.7e-15 85.5 182 36.3
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.9e-14 84.3 187 34.2
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.9e-06 57.8 177 26.6


User provided reference genes

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