Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.5e-52 209.1 99 100.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 9.5e-39 163.3 101 74.3
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.8e-37 159.1 100 73.0
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 4.4e-36 154.5 102 71.6
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.7e-33 145.2 101 67.3
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 7.8e-33 143.7 100 70.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 4.7e-30 134.4 101 64.4
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.4e-29 132.9 99 62.6
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.0e-29 131.3 100 59.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.0e-29 131.3 100 59.0
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 5.2e-29 131.0 98 62.2
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.8e-29 130.6 93 64.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.9e-29 130.2 100 59.0
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.2e-28 129.8 103 59.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.5e-28 129.4 99 57.6
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.0e-28 129.0 101 61.4
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.6e-28 128.6 101 60.4
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 4.4e-28 127.9 116 54.3
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 7.5e-28 127.1 102 59.8
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 7.5e-28 127.1 99 55.6
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 2.9e-27 125.2 102 59.8
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 6.4e-27 124.0 103 58.3
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 8.3e-27 123.6 104 56.7
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.4e-26 122.9 101 57.4
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.8e-26 122.5 108 54.6
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 3.2e-26 121.7 100 60.0
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.2e-26 121.7 101 57.4
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 4.1e-26 121.3 101 54.5
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 5.4e-26 120.9 103 58.3
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 7.0e-26 120.6 103 57.3
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 7.0e-26 120.6 107 58.9
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 7.0e-26 120.6 101 59.4
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 9.2e-26 120.2 103 57.3
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 9.2e-26 120.2 85 68.2
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 9.2e-26 120.2 101 56.4
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 1.6e-25 119.4 105 57.1
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 5.9e-25 117.5 101 50.5
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.0e-24 116.7 101 57.4
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.3e-24 116.3 108 53.7
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.7e-24 115.9 101 55.4
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.7e-24 115.9 103 53.4
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.7e-24 115.9 102 57.8
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 2.3e-24 115.5 100 55.0
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.3e-24 115.5 102 54.9
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 5.0e-24 114.4 101 50.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.9e-23 112.5 101 49.5
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.3e-23 111.7 104 51.9
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 4.3e-23 111.3 105 52.4
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 5.6e-23 110.9 104 51.9
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 5.6e-23 110.9 101 54.5
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 7.3e-23 110.5 101 55.4
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 7.3e-23 110.5 101 48.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 7.3e-23 110.5 103 49.5
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 9.5e-23 110.2 104 51.0
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.2e-22 109.8 104 50.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.6e-22 109.4 103 52.4
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 2.1e-22 109.0 104 51.9
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.8e-22 108.6 101 54.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.8e-22 108.6 101 55.4
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 2.8e-22 108.6 102 51.0
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 2.8e-22 108.6 105 50.5
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.7e-22 107.8 102 49.0
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 8.0e-22 107.1 100 49.0
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.4e-21 106.3 101 52.5
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.8e-21 105.9 112 51.8
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.1e-21 105.1 93 54.8
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.0e-21 104.8 108 50.9
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 4.0e-21 104.8 78 64.1
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 4.0e-21 104.8 111 49.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 8.9e-21 103.6 114 48.2
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 8.9e-21 103.6 93 52.7
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-20 103.2 102 53.9
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.0e-20 102.4 102 52.0
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.0e-20 102.4 107 48.6
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.6e-20 102.1 103 52.4
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 3.4e-20 101.7 92 54.3
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 5.8e-20 100.9 130 44.6
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 7.5e-20 100.5 81 61.7
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.8e-20 100.1 129 45.0
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 9.8e-20 100.1 130 44.6
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.3e-19 99.8 105 52.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-19 99.4 78 59.0
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.7e-19 99.4 107 46.7
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.2e-19 99.0 94 51.1
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 2.2e-19 99.0 93 50.5
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.9e-19 98.6 106 47.2
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 3.7e-19 98.2 100 48.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.9e-19 97.8 109 45.9
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 4.9e-19 97.8 105 49.5
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 8.3e-19 97.1 94 50.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 8.3e-19 97.1 116 44.0
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.1e-18 96.7 103 46.6
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.4e-18 95.5 114 45.6
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 3.2e-18 95.1 95 46.3
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 3.2e-18 95.1 95 46.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 3.2e-18 95.1 103 48.5
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 4.1e-18 94.7 95 46.3
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 4.1e-18 94.7 95 46.3
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 4.1e-18 94.7 95 46.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.1e-18 94.7 97 50.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 4.1e-18 94.7 94 47.9
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 7.0e-18 94.0 103 47.6
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 7.0e-18 94.0 93 48.4
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.2e-17 93.2 96 49.0
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.7e-17 92.0 103 45.6
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.6e-17 91.3 87 50.6
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 7.8e-17 90.5 101 47.5
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.3e-16 89.7 107 48.6
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.7e-16 89.4 93 45.2
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 3.9e-16 88.2 99 44.4
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 6.6e-16 87.4 60 65.0
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.1e-15 86.7 101 45.5
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.5e-15 86.3 79 54.4
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.9e-15 85.9 126 39.7
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 5.6e-15 84.3 104 46.2
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 7.3e-15 84.0 100 44.0
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.1e-14 82.4 98 45.9
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.1e-14 82.4 100 42.0
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 4.7e-14 81.3 79 51.9
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.8e-13 79.3 111 41.4
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.8e-13 79.3 97 42.3
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 3.1e-13 78.6 111 41.4
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.0e-12 75.9 105 38.1
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 7.5e-12 73.9 58 55.2
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 7.5e-12 73.9 99 42.4
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.9e-10 69.3 105 39.0
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 5.4e-10 67.8 79 45.6
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 9.2e-10 67.0 92 44.6
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.7e-09 65.5 84 41.7
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 7.8e-09 63.9 44 61.4
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.0e-08 63.5 94 39.4
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.3e-08 63.2 63 47.6
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.1e-07 60.1 101 33.7
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.5e-07 58.9 104 31.7
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 3.3e-07 58.5 68 42.6
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.1e-06 55.8 103 31.1
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.1e-06 55.8 67 38.8
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 6.2e-06 54.3 77 41.6
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 8.1e-06 53.9 70 48.6
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.1e-06 53.9 70 48.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.1e-06 53.9 70 48.6
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 8.1e-06 53.9 74 41.9


User provided reference genes

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