Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 1.7e-49 199.1 108 100.0
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 2.2e-36 155.6 108 78.7
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 8.2e-36 153.7 110 79.1
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 9.0e-35 150.2 110 76.4
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 2.6e-34 148.7 108 75.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 5.9e-34 147.5 107 72.9
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.9e-33 145.2 109 73.4
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 2.9e-33 145.2 109 74.3
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 5.0e-33 144.4 108 74.1
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 5.0e-33 144.4 106 72.6
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 6.5e-33 144.1 107 71.0
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 6.5e-33 144.1 109 71.6
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 6.5e-33 144.1 106 74.5
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 8.5e-33 143.7 105 72.4
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 1.4e-32 142.9 108 72.2
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 1.9e-32 142.5 108 71.3
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 1.9e-32 142.5 106 74.5
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.2e-32 141.7 110 71.8
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 7.2e-32 140.6 104 71.2
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 1.2e-31 139.8 106 67.9
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 1.2e-31 139.8 102 73.5
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 1.6e-31 139.4 107 67.3
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 2.1e-31 139.0 109 71.6
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 2.7e-31 138.7 104 71.2
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 2.7e-31 138.7 104 71.2
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 3.6e-31 138.3 107 67.3
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 4.6e-31 137.9 106 71.7
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 4.6e-31 137.9 109 70.6
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 6.1e-31 137.5 106 70.8
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 6.1e-31 137.5 108 69.4
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 7.9e-31 137.1 105 69.5
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 1.0e-30 136.7 107 67.3
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 1.4e-30 136.3 109 70.6
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 2.3e-30 135.6 100 69.0
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 2.3e-30 135.6 107 72.0
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 3.0e-30 135.2 105 68.6
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 3.0e-30 135.2 108 69.4
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 6.7e-30 134.0 104 68.3
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 8.8e-30 133.7 109 67.9
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 8.8e-30 133.7 100 68.0
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 1.1e-29 133.3 110 69.1
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 1.1e-29 133.3 104 68.3
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 1.1e-29 133.3 101 70.3
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 1.9e-29 132.5 106 67.0
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 2.5e-29 132.1 109 67.0
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 4.3e-29 131.3 108 67.6
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 4.3e-29 131.3 107 66.4
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 5.7e-29 131.0 108 67.6
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 9.7e-29 130.2 109 67.0
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 2.2e-28 129.0 108 65.7
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 2.8e-28 128.6 105 66.7
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 4.8e-28 127.9 109 66.1
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 4.8e-28 127.9 92 71.7
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 4.8e-28 127.9 110 65.5
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 4.8e-28 127.9 110 65.5
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 6.3e-28 127.5 112 66.1
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 6.3e-28 127.5 104 63.5
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 8.2e-28 127.1 109 66.1
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 1.1e-27 126.7 110 66.4
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 1.1e-27 126.7 108 63.9
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 1.4e-27 126.3 110 66.4
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 1.4e-27 126.3 110 66.4
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 1.8e-27 125.9 107 61.7
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 3.1e-27 125.2 93 68.8
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 4.1e-27 124.8 103 67.0
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 5.3e-27 124.4 110 63.6
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 9.1e-27 123.6 106 65.1
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 9.1e-27 123.6 103 65.0
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 9.1e-27 123.6 109 64.2
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 1.2e-26 123.2 107 63.6
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 1.5e-26 122.9 110 65.5
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 2.6e-26 122.1 110 65.5
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 3.4e-26 121.7 85 75.3
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 7.7e-26 120.6 109 65.1
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 7.7e-26 120.6 107 64.5
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 1.0e-25 120.2 114 62.3
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 1.3e-25 119.8 81 76.5
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 6.5e-25 117.5 114 57.0
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.4e-24 116.3 114 57.9
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 2.5e-24 115.5 105 62.9
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 3.2e-24 115.2 115 55.7
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 4.2e-24 114.8 114 57.9
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 9.4e-24 113.6 114 57.0
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 2.7e-23 112.1 114 55.3
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 2.7e-23 112.1 114 56.1
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 6.1e-23 110.9 93 62.4
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 6.1e-23 110.9 88 63.6
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 6.7e-22 107.5 114 55.3
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 8.8e-22 107.1 114 54.4
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 1.1e-21 106.7 114 54.4
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 3.3e-21 105.1 90 61.1
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 5.7e-21 104.4 114 54.4
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 9.7e-21 103.6 107 53.3
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 9.7e-21 103.6 112 51.8
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 5.3e-19 97.8 87 55.2
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 1.5e-13 79.7 93 45.2
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 2.2e-12 75.9 88 44.3
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 2.8e-12 75.5 73 54.8
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 2.8e-12 75.5 73 54.8
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 4.8e-12 74.7 95 44.2
Hma1.2p1_1523F.1_g288770 Hydrangea macrophylla HOM05D002849 ORTHO05D009472 1.5e-08 63.2 53 56.6


User provided reference genes

Program Settings