Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.9e-100 367.9 193 100.0
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.5e-80 302.4 193 79.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 5.9e-77 291.2 196 77.6
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.3e-76 290.0 197 75.1
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.8e-76 288.5 194 73.2
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.0e-76 288.1 193 75.6
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.5e-76 287.7 198 72.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.5e-76 287.3 199 75.4
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 8.5e-76 287.3 197 74.6
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-75 286.6 194 73.7
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.2e-75 285.4 185 75.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.5e-75 284.6 193 74.1
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.6e-74 283.1 170 79.4
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.1e-74 281.2 199 73.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.4e-73 280.0 191 75.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-73 280.0 193 73.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.4e-73 280.0 193 72.5
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.0e-73 278.9 169 81.1
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 5.1e-73 278.1 202 71.8
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 8.8e-73 277.3 194 74.2
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-72 276.9 196 73.5
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.5e-72 276.6 193 73.6
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.5e-72 275.8 195 73.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.5e-72 275.8 190 71.6
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.7e-72 274.6 186 73.1
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 7.4e-72 274.2 200 71.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.8e-71 272.3 187 72.7
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.7e-71 271.9 172 79.1
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.8e-71 271.6 188 73.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.8e-71 271.6 193 71.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.1e-70 270.4 197 70.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.1e-70 268.9 196 67.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 3.1e-70 268.9 172 74.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.1e-70 268.5 180 75.0
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.3e-70 268.1 175 76.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 9.1e-70 267.3 190 71.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-69 266.9 193 71.5
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.5e-69 265.0 180 75.0
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 4.5e-69 265.0 191 72.8
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.7e-69 264.2 202 67.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.3e-68 263.5 198 72.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.7e-68 263.1 184 73.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.2e-68 262.7 177 72.3
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.9e-68 262.3 201 67.2
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.9e-68 262.3 180 72.8
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.8e-68 261.9 193 74.1
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.5e-68 261.2 196 68.4
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.4e-67 260.0 192 69.8
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.4e-67 260.0 174 75.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.5e-67 259.2 169 76.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 3.2e-67 258.8 187 71.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.2e-67 258.8 193 70.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 4.2e-67 258.5 188 70.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 4.2e-67 258.5 187 67.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.2e-67 257.7 171 73.1
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 9.4e-67 257.3 186 67.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.2e-66 256.9 188 69.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.2e-66 256.9 166 73.5
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.1e-66 256.1 194 67.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.1e-66 256.1 180 71.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.1e-66 256.1 180 71.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.7e-66 255.8 182 68.1
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 4.7e-66 255.0 188 69.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.1e-66 254.6 207 65.2
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.4e-65 253.4 182 69.8
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.4e-65 253.4 150 81.3
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.8e-65 253.1 173 75.1
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-65 253.1 183 69.4
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.8e-65 253.1 178 70.8
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.3e-65 252.7 188 71.3
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.3e-65 252.7 184 69.6
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.3e-65 252.7 196 66.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.3e-65 252.7 195 64.6
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.0e-65 252.3 181 68.5
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 3.0e-65 252.3 201 66.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 3.0e-65 252.3 201 66.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.9e-65 251.9 190 66.8
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.9e-65 251.9 205 64.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.1e-65 251.5 190 66.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.1e-65 251.5 190 66.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 6.7e-65 251.1 191 68.6
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 6.7e-65 251.1 191 68.6
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 8.8e-65 250.8 182 69.2
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.8e-65 250.8 180 70.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.5e-64 250.0 182 68.7
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.7e-64 248.1 189 68.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.7e-64 248.1 189 68.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 5.7e-64 248.1 187 65.8
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 9.7e-64 247.3 182 68.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.7e-63 246.5 202 64.4
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.7e-63 246.5 180 68.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.7e-63 245.4 225 60.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 6.3e-63 244.6 178 65.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 6.3e-63 244.6 166 69.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.3e-63 244.6 196 64.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 8.2e-63 244.2 172 70.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 178 65.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.4e-62 243.4 184 66.3
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.1e-62 242.3 169 72.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 5.3e-62 241.5 170 70.6
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-61 240.4 175 67.4
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.5e-61 240.0 174 69.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.0e-61 239.6 161 71.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 3.5e-61 238.8 168 72.6
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 5.9e-61 238.0 166 69.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.0e-60 237.3 169 69.8
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.9e-60 235.7 175 68.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 6.5e-60 234.6 175 68.0
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.5e-59 232.6 166 68.1
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.2e-59 231.1 166 67.5
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.7e-58 229.2 178 62.4
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.3e-57 226.1 224 55.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.8e-57 224.2 214 56.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 8.8e-57 224.2 191 61.3
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 8.8e-57 224.2 183 62.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.0e-56 223.0 156 69.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.0e-56 223.0 156 69.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.4e-56 221.9 169 68.6
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.4e-56 221.9 142 77.5
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 9.7e-56 220.7 199 61.8
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.8e-55 218.4 187 59.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.5e-51 206.8 187 57.8
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 4.2e-51 205.3 218 51.4
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.2e-50 203.8 160 64.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.8e-47 192.6 167 56.9
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-46 189.1 165 55.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 3.5e-45 185.7 150 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.2e-42 177.2 163 54.6
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-42 177.2 128 65.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 8.3e-39 164.5 127 64.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.2e-37 160.6 172 48.8
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.6e-36 154.5 107 70.1
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.5e-35 153.7 103 71.8
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.2e-35 151.4 168 46.4
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-34 150.2 165 49.7
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-34 150.2 127 59.8
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.6e-34 149.1 85 80.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.0e-34 147.9 108 66.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.0e-33 145.6 101 68.3
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.0e-32 143.3 93 74.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 7.5e-32 141.4 100 67.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.4e-30 136.3 139 52.5
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 7.0e-30 134.8 99 68.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 8.6e-28 127.9 97 62.9
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.6e-26 123.6 85 75.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.6e-24 116.3 167 43.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.4e-22 109.8 82 68.3
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 3.0e-20 102.8 72 70.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.2e-15 86.7 136 36.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 5.4e-14 82.0 63 68.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.3e-12 77.4 76 56.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.5e-11 71.2 49 73.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-10 70.9 98 42.9
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.4e-09 67.4 41 82.9
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.4e-08 62.8 63 50.8
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 4.4e-08 62.4 59 57.6
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.7e-07 60.5 117 38.5
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 2.9e-07 59.7 59 55.9
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.7e-07 59.3 46 71.7


User provided reference genes

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