Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.2e-178 629.0 360 100.0
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.4e-147 525.4 360 75.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 3.1e-140 502.3 366 72.1
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 7.0e-140 501.1 361 76.7
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.5e-137 492.7 366 71.3
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 6.1e-136 488.0 337 74.8
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 8.8e-135 484.2 369 75.1
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.3e-134 482.3 336 74.4
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 4.4e-134 481.9 364 70.3
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.7e-133 479.9 336 72.6
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 2.2e-133 479.6 337 72.7
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.4e-132 476.9 337 73.6
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.8e-132 476.5 336 73.2
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.6e-131 473.4 337 73.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 2.6e-131 472.6 336 70.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 3.5e-131 472.2 335 74.9
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.9e-131 471.5 363 68.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 7.7e-131 471.1 313 75.1
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 6.5e-130 468.0 336 70.5
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 6.5e-130 468.0 336 70.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.5e-130 468.0 255 89.8
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.2e-129 465.7 337 77.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.2e-129 465.7 339 71.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 3.2e-129 465.7 325 71.4
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.2e-128 463.8 316 74.1
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.8e-127 459.9 360 66.4
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.0e-127 458.8 340 69.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.2e-126 457.2 332 71.1
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.6e-126 456.1 361 66.5
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.3e-125 453.8 337 69.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.3e-125 453.8 339 68.7
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.3e-125 453.8 333 70.9
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.2e-125 453.0 340 68.8
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.2e-125 453.0 339 68.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 2.8e-125 452.6 325 74.2
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.7e-125 452.2 360 68.3
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.7e-125 452.2 337 69.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.7e-125 452.2 338 69.2
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.8e-125 451.8 368 68.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 4.8e-125 451.8 339 69.0
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.8e-125 451.8 311 73.6
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 8.3e-125 451.1 316 71.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 1.8e-124 449.9 332 67.5
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.8e-124 449.9 255 86.7
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.4e-124 449.5 337 69.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.1e-124 449.1 311 71.4
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 3.1e-124 449.1 326 73.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.2e-123 447.2 312 70.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-123 446.8 346 67.3
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-123 446.8 346 67.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.9e-123 444.9 328 69.8
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.9e-123 444.9 328 69.8
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.0e-122 444.1 316 71.2
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.3e-122 443.7 256 82.0
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.7e-122 443.4 311 70.4
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.2e-122 443.0 311 72.0
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.2e-122 443.0 311 72.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 3.8e-122 442.2 311 69.8
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 8.5e-122 441.0 333 69.1
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 4.2e-121 438.7 256 82.8
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.5e-121 438.3 307 72.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 9.4e-121 437.6 309 70.2
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-120 436.8 360 64.4
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 2.7e-120 436.0 332 69.6
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 6.1e-120 434.9 403 60.5
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.4e-119 433.7 359 64.1
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.3e-119 433.0 311 69.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.8e-119 431.0 331 65.9
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.6e-118 429.5 333 66.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 5.7e-118 428.3 353 66.0
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 2.8e-117 426.0 360 63.1
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 4.9e-117 425.2 299 72.2
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 4.9e-117 425.2 337 65.0
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.4e-116 422.9 316 69.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 9.1e-116 421.0 335 65.7
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 2.0e-115 419.9 308 70.8
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.0e-114 417.5 318 69.2
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.7e-114 416.8 332 71.7
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.3e-114 416.4 335 66.6
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 6.6e-114 414.8 335 65.4
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 4.2e-113 412.1 327 64.5
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 9.5e-113 411.0 336 64.3
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 9.5e-113 411.0 309 68.3
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.8e-112 409.5 256 78.1
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 4.7e-112 408.7 255 79.6
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 6.8e-111 404.8 256 78.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.4e-110 402.1 229 83.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 9.2e-108 394.4 326 63.2
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.2e-107 394.0 361 59.8
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 5.0e-106 388.7 304 66.8
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 2.8e-104 382.9 369 65.0
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 9.2e-100 367.9 311 64.6
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.3e-95 353.2 258 65.9
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 2.1e-91 340.1 324 61.7
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 2.1e-83 313.5 315 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.1e-81 307.8 252 59.9
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.9e-81 307.0 255 62.0
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.0e-78 297.0 173 80.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-78 295.8 163 86.5
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.2e-75 287.7 264 54.5
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.3e-74 284.3 187 73.3
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.4e-70 269.6 144 88.2
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 5.8e-70 268.9 261 51.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.9e-60 237.3 224 49.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 8.1e-56 221.9 132 83.3
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 4.5e-54 216.1 125 82.4
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 4.5e-54 216.1 125 82.4
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.9e-52 210.7 242 50.4
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 6.0e-51 205.7 132 75.8
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 6.1e-43 179.1 282 36.5
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 3.4e-38 163.3 253 36.8
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.4e-34 151.4 151 58.9
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 6.7e-34 149.1 107 74.8
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.1e-31 141.7 238 37.0
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-26 124.8 83 73.5
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-25 119.8 201 41.3
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.6e-22 111.3 92 63.0
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 2.9e-21 107.1 53 92.5
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 7.0e-15 85.9 129 43.4
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.6e-14 84.7 65 61.5
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 2.2e-13 80.9 129 41.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.5e-12 78.2 138 42.0
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.6e-11 74.7 38 89.5
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 5.7e-09 66.2 39 76.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 5.7e-09 66.2 39 76.9
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.4e-07 60.8 252 25.8
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 4.1e-07 60.1 252 26.2
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.1e-07 60.1 49 59.2
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 9.1e-07 58.9 252 26.2
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 9.1e-07 58.9 250 24.0
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.6e-06 58.2 254 25.2
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.0e-06 57.8 252 25.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 3.5e-06 57.0 252 25.8
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 3.5e-06 57.0 252 24.2
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 4.5e-06 56.6 252 24.6
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 4.5e-06 56.6 198 27.8
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 5.9e-06 56.2 210 28.1
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 7.7e-06 55.8 252 25.4


User provided reference genes

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