Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.3e-228 796.2 452 100.0
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.0e-152 543.1 441 77.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.9e-131 473.4 452 68.4
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 9.1e-129 464.5 463 63.7
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.5e-126 455.3 454 63.9
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.5e-120 437.2 429 62.9
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.0e-120 436.8 418 64.4
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.0e-116 424.5 437 61.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.5e-112 409.5 390 61.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.4e-108 397.5 459 58.4
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.8e-108 397.1 467 56.7
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.8e-106 389.8 441 54.2
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.0e-100 369.4 441 55.1
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 9.8e-99 364.8 470 51.9
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 4.8e-98 362.5 388 57.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.1e-97 358.2 424 54.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.3e-95 353.6 432 51.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.5e-94 350.9 434 54.6
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 8.9e-92 341.7 416 56.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 8.9e-92 341.7 416 56.7
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 5.7e-91 339.0 378 56.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 7.5e-91 338.6 436 52.5
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.1e-89 334.7 416 52.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 7.0e-89 332.0 422 52.6
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 5.0e-87 325.9 351 56.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 9.5e-86 321.6 412 50.5
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.4e-83 313.2 476 49.2
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 7.5e-83 312.0 445 52.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 7.0e-81 305.4 445 47.4
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 7.0e-81 305.4 458 43.9
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-80 304.7 472 44.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-80 304.7 438 48.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.7e-80 303.5 439 49.9
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.7e-80 303.5 439 49.9
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.0e-79 301.6 501 42.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.7e-79 300.8 384 50.8
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.7e-79 300.8 393 50.4
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.3e-79 300.4 428 48.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.0e-79 300.1 468 49.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.6e-79 298.9 502 42.2
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.1e-78 298.1 436 45.4
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 5.6e-78 295.8 385 48.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 7.3e-78 295.4 389 51.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.1e-77 293.9 371 49.9
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.7e-77 292.7 466 43.8
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-75 287.7 322 58.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-75 287.3 454 48.2
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.6e-75 287.0 317 59.6
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.9e-74 282.7 393 50.9
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.3e-74 282.0 357 55.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 8.3e-74 282.0 472 42.4
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.4e-73 280.4 379 48.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.0e-73 278.9 420 49.8
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.2e-72 278.1 431 48.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.0e-71 275.0 378 49.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 8.6e-71 271.9 376 47.9
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.5e-70 270.4 390 46.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.5e-70 270.4 390 46.2
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.3e-70 270.0 501 42.7
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.3e-70 269.6 480 46.0
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 6.2e-69 265.8 459 43.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 8.1e-69 265.4 437 45.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.0e-68 263.1 430 42.6
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.2e-67 261.5 425 46.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 2.0e-67 260.8 450 44.0
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.6e-67 260.4 473 42.7
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.6e-67 260.4 412 44.4
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 5.8e-67 259.2 376 47.9
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 5.8e-67 259.2 457 44.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 7.5e-67 258.8 500 40.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.7e-66 257.7 430 45.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 2.9e-66 256.9 511 41.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.7e-66 256.5 376 47.9
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.1e-65 253.1 502 38.8
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 5.4e-65 252.7 415 43.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 7.1e-65 252.3 455 40.4
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.8e-64 248.8 506 41.7
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.6e-63 245.7 476 41.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.9e-62 244.2 446 43.3
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-62 244.2 370 45.4
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 9.5e-62 241.9 448 40.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.2e-61 239.2 464 40.9
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.0e-60 236.5 464 39.7
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.8e-60 235.7 428 39.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 8.9e-60 235.3 364 49.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.5e-59 234.6 427 43.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.6e-59 233.8 406 42.9
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.4e-59 233.4 472 38.8
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.2e-58 230.7 379 44.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 6.4e-58 229.2 475 39.4
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.2e-57 226.5 428 41.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.7e-55 221.1 524 36.1
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.7e-55 221.1 453 38.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.9e-55 219.9 475 38.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 6.6e-55 219.2 465 38.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.5e-54 217.2 528 41.1
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 5.6e-54 216.1 393 42.7
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.3e-53 214.9 539 39.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.8e-53 213.0 541 40.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 8.1e-53 212.2 523 38.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-52 211.8 402 44.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.4e-52 211.5 516 36.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.4e-52 210.7 486 38.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 6.9e-52 209.1 553 33.8
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.2e-51 208.4 531 37.3
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 4.9e-50 203.0 485 36.7
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 6.4e-50 202.6 480 36.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 6.4e-50 202.6 459 40.5
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.2e-49 199.9 489 35.2
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 9.3e-49 198.7 481 36.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.5e-48 196.8 479 36.1
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 7.8e-48 195.7 346 43.6
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.3e-47 194.9 503 36.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.7e-47 194.5 190 59.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.7e-47 194.5 452 38.1
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.7e-47 194.5 400 37.5
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 6.6e-47 192.6 501 35.1
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.5e-46 190.7 235 57.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.3e-46 189.1 499 35.1
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 3.1e-44 183.7 424 38.4
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 6.9e-44 182.6 491 35.8
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 6.9e-44 182.6 491 35.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 9.0e-44 182.2 517 33.8
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.6e-43 180.6 466 35.4
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 7.6e-43 179.1 519 34.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.3e-42 178.3 496 35.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.8e-42 176.8 549 34.4
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.8e-42 176.8 549 34.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.4e-41 174.1 452 35.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 9.3e-41 172.2 542 34.3
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-40 171.8 358 39.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-37 161.8 364 40.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 8.1e-37 159.1 510 32.2
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 8.4e-34 149.1 424 33.5
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.4e-34 149.1 419 33.4
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.1e-33 148.7 383 34.2
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.7e-32 144.1 513 28.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.6e-32 143.3 384 32.6
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.0e-31 142.1 277 40.4
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 4.3e-30 136.7 438 32.2
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 7.4e-30 136.0 511 29.9
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.6e-30 135.6 430 34.2
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.6e-29 134.8 386 33.2
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.7e-29 133.7 429 34.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.8e-29 133.3 411 35.0
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.8e-28 131.3 527 28.5
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.8e-27 126.3 198 47.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-25 121.7 392 30.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.9e-25 121.3 397 32.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 3.2e-25 120.6 182 49.5
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.8e-23 114.8 409 32.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.7e-23 112.5 402 32.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.7e-23 112.5 516 27.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-22 111.7 393 33.3
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.5e-22 110.9 142 50.0
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 1.3e-21 108.6 477 31.0
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.8e-21 107.5 395 33.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 8.2e-21 105.9 397 31.5
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.1e-20 105.5 392 28.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-20 105.1 103 62.1
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 7.7e-19 99.4 352 30.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.1e-17 95.5 344 29.7
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 4.6e-16 90.1 388 31.4
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 6.1e-16 89.7 388 31.7
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.5e-14 85.1 437 29.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 2.0e-14 84.7 219 34.7
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.2e-13 81.3 365 28.2
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.2e-13 79.3 132 41.7
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.3e-12 76.6 387 26.9
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.4e-11 73.9 78 59.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.7e-10 71.6 78 57.7
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.8e-10 70.5 131 42.0
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 5.0e-10 70.1 398 26.9
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.4e-09 68.6 378 27.0
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 4.2e-09 67.0 132 39.4
TAR628G1156 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.5e-09 66.6 48 68.8
Dinv36995 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-08 65.5 97 45.4
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.1e-08 64.7 284 29.2
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.6e-08 63.9 78 51.3
FAN09G2065 Fragaria x ananassa HOM05D018448 ORTHO05D020684 2.3e-07 61.2 386 26.7
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 6.7e-07 59.7 117 36.8
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.6e-06 57.8 339 26.3
Lalb_Chr05g0216141 Lupinus albus HOM05D003733 ORTHO05D004035 4.4e-06 57.0 43 69.8


User provided reference genes

Program Settings