Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.4e-127 458.8 219 100.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 6.8e-106 387.5 224 86.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 3.3e-92 342.0 218 75.7
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 1.1e-84 317.0 205 71.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.5e-84 316.6 203 74.4
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 2.0e-81 306.2 203 70.9
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 9.9e-81 303.9 202 73.3
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 1.3e-80 303.5 205 70.7
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 3.8e-80 302.0 204 69.6
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.9e-79 299.7 202 72.3
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.6e-78 296.6 200 71.0
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 2.1e-78 296.2 200 71.0
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.0e-77 293.9 211 67.8
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 3.9e-77 292.0 220 67.3
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 3.9e-77 292.0 202 68.8
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 6.6e-77 291.2 202 67.8
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 6.6e-77 291.2 207 66.7
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 8.7e-77 290.8 202 66.8
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 3.3e-76 288.9 205 67.3
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 4.3e-76 288.5 203 68.0
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.8e-75 285.8 207 68.1
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.1e-74 283.9 202 66.3
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.1e-74 283.9 205 67.3
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.4e-74 283.5 205 66.3
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 1.4e-74 283.5 202 66.8
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 5.3e-74 281.6 193 69.4
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 9.0e-74 280.8 206 63.1
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 2.6e-73 279.3 202 68.8
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 4.5e-73 278.5 205 66.8
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 4.5e-73 278.5 203 64.0
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 9.9e-73 277.3 203 66.5
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 4.9e-72 275.0 195 66.7
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 1.9e-71 273.1 202 67.8
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.9e-71 273.1 202 65.3
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.9e-71 273.1 202 65.3
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 2.4e-71 272.7 204 65.2
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 4.2e-71 271.9 199 66.3
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 4.2e-71 271.9 207 67.1
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.2e-70 270.4 209 66.0
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 4.6e-70 268.5 203 67.0
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 4.6e-70 268.5 205 63.4
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 7.9e-70 267.7 204 66.2
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.3e-69 266.9 205 65.4
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 5.1e-69 265.0 194 68.0
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.5e-68 263.5 196 66.8
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.5e-68 263.5 197 64.5
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.9e-68 263.1 199 62.8
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 4.8e-67 258.5 204 63.2
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 6.2e-67 258.1 218 61.5
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 3.1e-66 255.8 204 64.2
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 3.1e-66 255.8 204 64.2
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 4.0e-66 255.4 201 62.2
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.2e-65 253.8 222 58.6
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.5e-65 253.4 222 59.9
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 2.0e-65 253.1 200 61.0
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 2.0e-65 253.1 210 60.5
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 2.0e-65 253.1 210 60.5
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 2.6e-65 252.7 190 61.6
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 3.4e-65 252.3 201 62.2
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 7.6e-65 251.1 196 61.7
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-64 250.4 194 62.4
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.2e-64 249.6 194 61.9
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.2e-64 249.6 207 62.8
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.2e-64 249.6 207 62.3
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 2.9e-64 249.2 205 62.4
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.9e-64 249.2 195 60.5
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 3.8e-64 248.8 210 59.5
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 3.8e-64 248.8 198 63.1
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 3.8e-64 248.8 207 61.8
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.9e-64 248.4 196 61.2
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 4.9e-64 248.4 200 63.5
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 6.5e-64 248.1 194 61.9
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 8.4e-64 247.7 196 60.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.9e-63 246.5 196 60.2
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 2.5e-63 246.1 195 61.0
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.2e-63 245.7 196 60.2
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.2e-63 245.7 196 60.2
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 7.1e-63 244.6 220 60.0
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 1.6e-62 243.4 195 61.5
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 1.6e-62 243.4 185 65.9
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.6e-62 243.4 207 58.9
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 6.0e-62 241.5 194 62.4
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 7.9e-62 241.1 196 62.2
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.3e-61 239.6 202 59.4
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 3.0e-61 239.2 197 59.9
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 6.7e-61 238.0 199 59.8
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 6.7e-61 238.0 214 58.4
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 6.3e-59 231.5 177 67.2
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.1e-58 230.7 201 57.7
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 3.1e-58 229.2 201 57.2
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 4.1e-58 228.8 208 55.8
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.1e-58 228.8 196 59.2
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.5e-55 219.5 196 57.1
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 3.2e-55 219.2 187 60.4
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.0e-53 214.2 207 54.1
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.3e-53 213.8 174 61.5
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 3.9e-53 212.2 159 62.3
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 8.7e-53 211.1 219 52.5
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.1e-50 204.1 173 60.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.0e-48 197.6 153 61.4
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 9.4e-47 191.0 155 60.0
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.1e-46 189.9 155 61.9
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 1.3e-43 180.6 172 56.4
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 3.7e-43 179.1 252 39.3
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 8.2e-43 177.9 117 72.6
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 9.1e-42 174.5 206 48.1
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.3e-40 170.6 207 46.9
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 2.2e-40 169.9 238 44.5
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.6e-38 163.7 201 45.3
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 5.2e-37 158.7 154 50.6
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.0e-36 156.8 122 68.0
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 5.7e-28 128.6 123 53.7
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 6.3e-27 125.2 110 53.6
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.8e-26 123.6 118 55.9
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.4e-21 107.5 124 49.2
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 2.2e-19 100.1 64 73.4
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 2.1e-14 83.6 58 72.4
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.2e-12 77.8 50 70.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.4e-10 70.1 150 35.3
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.5e-07 60.1 68 48.5
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 3.3e-07 59.7 84 40.5
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 7.3e-07 58.5 80 37.5
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 6.1e-06 55.5 73 37.0


User provided reference genes

Program Settings