Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.8e-218 763.5 870 100.0
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 8.4e-131 472.2 875 82.7
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.6e-126 458.0 873 77.9
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 5.2e-125 453.0 875 80.7
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 8.4e-123 445.7 875 70.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 2.3e-120 437.6 870 77.2
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 3.9e-120 436.8 874 78.7
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.4e-117 427.6 865 78.0
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 6.0e-113 412.9 877 80.5
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.6e-110 404.8 872 77.9
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 2.1e-110 404.4 871 71.0
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 4.8e-110 403.3 875 79.1
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 6.2e-110 402.9 864 79.9
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 4.5e-108 396.7 871 78.6
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 9.9e-108 395.6 869 79.4
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 9.9e-108 395.6 868 74.9
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.4e-106 391.7 869 73.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 9.3e-106 389.0 871 75.5
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 8.7e-104 382.5 868 77.9
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 4.3e-103 380.2 866 77.1
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 7.4e-103 379.4 872 75.9
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 9.6e-103 379.0 868 77.9
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.4e-101 374.4 196 92.9
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.6e-100 370.9 870 76.4
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 7.6e-100 369.4 875 75.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 2.1e-97 361.3 876 75.5
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 8.7e-96 355.9 875 76.2
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.9e-91 340.9 893 71.6
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 5.5e-90 336.7 875 71.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 9.4e-90 335.9 868 70.0
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.0e-88 332.4 867 72.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.4e-88 332.0 867 75.0
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.8e-86 324.3 873 73.7
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 2.4e-85 321.2 869 67.7
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 9.1e-85 319.3 868 74.0
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 9.1e-85 319.3 865 74.1
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 9.1e-85 319.3 875 63.4
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.0e-84 318.2 868 72.4
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.6e-84 317.8 873 73.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.6e-84 317.8 868 72.8
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.2e-83 314.7 874 74.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 5.0e-83 313.5 875 67.0
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.5e-83 312.8 869 75.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.9e-82 311.6 867 71.6
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.5e-82 311.2 867 74.0
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 5.5e-82 310.1 870 65.6
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 5.5e-82 310.1 870 69.8
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 9.4e-82 309.3 867 71.5
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 9.4e-82 309.3 875 66.2
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.6e-81 307.4 870 66.1
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.6e-81 307.4 870 66.1
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 4.7e-81 307.0 878 65.4
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 4.7e-81 307.0 876 64.3
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.0e-80 305.8 878 69.2
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 8.8e-80 302.8 873 72.6
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.5e-79 302.0 867 71.2
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.6e-79 301.2 873 72.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.6e-79 301.2 873 72.4
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 2.6e-79 301.2 864 74.3
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 3.3e-79 300.8 873 73.8
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 8.2e-78 296.2 871 72.7
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.8e-77 295.0 882 59.1
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 9.1e-77 292.7 869 69.5
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 3.5e-76 290.8 884 62.7
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 5.9e-76 290.0 868 72.9
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 7.7e-76 289.7 870 72.2
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.8e-75 287.3 854 67.1
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.5e-74 284.6 867 69.4
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.5e-74 284.6 869 62.6
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.6e-73 282.0 872 64.8
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 5.2e-72 276.9 367 75.5
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 2.2e-70 271.6 865 69.2
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 6.3e-70 270.0 438 61.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 6.3e-70 270.0 369 74.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.6e-68 264.6 367 74.4
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.3e-67 262.3 780 78.5
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 3.8e-67 260.8 869 69.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.8e-67 260.8 832 71.6
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 7.2e-66 256.5 832 71.4
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.1e-65 255.0 861 72.4
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 8.0e-65 253.1 873 70.4
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.3e-64 251.5 386 69.7
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 5.2e-64 250.4 804 72.9
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 3.7e-62 244.2 823 71.4
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 4.8e-62 243.8 193 61.1
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.4e-61 242.3 865 71.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.4e-61 241.5 333 49.2
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 7.0e-61 240.0 363 71.3
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 9.4e-58 229.6 384 67.4
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.8e-56 225.3 848 57.2
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 5.2e-48 197.2 879 58.4
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 9.8e-47 193.0 383 62.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.1e-45 188.0 182 51.1
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.0e-43 183.0 858 65.7
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 6.6e-43 180.3 192 49.0
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.6e-41 175.6 384 60.9
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.6e-39 168.3 886 65.7
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.7e-38 165.6 141 58.2
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 6.6e-35 153.7 748 74.3
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.9e-34 152.1 187 42.8
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.6e-33 149.1 327 67.9
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.1e-32 146.4 193 45.1
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.1e-25 122.1 145 46.9
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.2e-20 106.3 93 62.4
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 3.5e-20 104.8 100 56.0
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 7.6e-15 87.0 112 48.2
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 7.3e-10 70.5 62 56.5
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 4.0e-08 64.7 69 49.3


User provided reference genes

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