Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 0.0e+00 1221.8 624 100.0
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 3.9e-223 778.5 633 64.6
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.4e-220 770.0 625 64.5
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.9e-217 759.6 624 62.0
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 6.7e-215 751.1 653 63.9
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.5e-214 749.2 625 62.4
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 3.3e-214 748.8 625 62.2
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.3e-214 748.8 626 62.9
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 5.3e-212 741.5 625 62.2
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 4.5e-211 738.4 625 62.6
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.0e-207 727.2 626 61.5
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.4e-207 726.9 623 61.0
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 3.0e-207 725.7 631 61.6
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.1e-206 723.8 631 60.7
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 4.3e-206 721.8 661 59.2
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 1.7e-202 709.9 659 59.6
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 1.1e-198 697.2 625 60.3
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 4.1e-196 688.7 638 59.4
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 2.0e-195 686.4 625 59.8
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.7e-194 683.3 641 57.7
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 2.2e-194 682.9 626 57.8
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 5.5e-193 678.3 626 57.8
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 9.4e-193 677.6 628 57.0
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 3.6e-192 675.6 637 57.8
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.0e-191 672.5 634 58.7
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.5e-190 670.2 634 58.4
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.8e-189 665.2 647 56.7
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.4e-188 663.7 637 56.5
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 3.1e-188 662.5 628 58.1
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 7.0e-188 661.4 653 57.0
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 7.0e-188 661.4 629 56.8
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.6e-187 660.2 623 57.6
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.5e-187 659.1 632 57.4
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.3e-186 657.1 629 56.3
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 8.5e-186 654.4 644 55.3
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.2e-185 652.5 629 56.3
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 2.1e-184 649.8 635 56.9
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 4.7e-184 648.7 627 57.7
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.8e-183 646.7 631 55.0
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 7.5e-182 641.3 625 56.0
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 9.7e-182 641.0 632 58.1
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 8.3e-181 637.9 635 55.7
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.6e-179 633.6 590 56.8
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 7.7e-179 631.3 536 59.9
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 1.0e-178 630.9 646 54.3
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 2.2e-178 629.8 627 55.7
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 3.8e-178 629.0 594 56.6
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 3.2e-177 625.9 557 59.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 9.4e-177 624.4 618 54.7
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 9.4e-177 624.4 556 60.1
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 8.0e-176 621.3 581 58.0
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.4e-175 620.5 641 54.9
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 6.8e-175 618.2 522 62.1
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.5e-174 617.1 590 56.1
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 2.6e-174 616.3 630 54.3
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 2.2e-173 613.2 627 53.9
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 3.7e-173 612.5 630 54.4
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.8e-172 610.1 623 53.6
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 4.1e-172 609.0 629 54.4
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.0e-171 606.7 585 56.2
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 7.7e-171 604.7 632 54.4
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 5.0e-170 602.1 643 51.2
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 3.3e-169 599.4 619 53.6
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 5.5e-169 598.6 576 55.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 5.5e-169 598.6 625 53.3
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.8e-167 593.6 570 55.8
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.8e-167 593.6 630 53.0
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.5e-166 590.5 589 56.5
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.6e-166 589.7 622 53.5
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 4.4e-166 589.0 553 55.7
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.8e-164 583.6 659 51.3
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 4.1e-164 582.4 621 53.1
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 7.0e-164 581.6 529 57.8
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 2.0e-163 580.1 642 51.1
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 4.5e-163 578.9 588 54.6
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 7.8e-163 578.2 584 55.0
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.3e-162 577.4 628 51.3
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.5e-161 573.9 554 55.8
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 1.0e-159 567.8 671 47.8
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 4.4e-158 562.4 627 49.9
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 8.6e-154 548.1 627 50.7
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.5e-153 547.4 589 53.0
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 4.3e-153 545.8 525 55.2
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 9.5e-153 544.7 635 50.7
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 6.2e-152 542.0 564 53.9
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.1e-148 531.2 588 51.5
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.9e-148 530.4 640 48.3
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 3.2e-148 529.6 584 52.1
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 3.2e-148 529.6 554 53.2
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 4.1e-148 529.3 585 49.9
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 7.8e-147 525.0 504 55.8
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 6.8e-143 511.9 637 49.5
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 6.8e-143 511.9 630 47.8
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 4.4e-142 509.2 573 49.2
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.1e-140 504.6 455 57.6
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 3.5e-131 473.0 536 49.8
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 1.4e-127 461.1 415 57.8
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.3e-104 384.8 454 48.0
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.2e-101 374.0 563 41.2
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 2.3e-90 337.4 493 38.9
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 2.0e-89 334.3 468 40.4
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 2.6e-86 323.9 584 38.2
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 4.5e-78 296.6 301 57.8
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.0e-62 244.6 318 43.4
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.0e-61 242.3 215 60.5
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 7.5e-57 226.1 201 60.7
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 3.7e-48 197.2 570 28.1
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.3e-29 135.6 595 24.7
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 2.3e-29 134.8 470 27.4
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 3.0e-29 134.4 369 29.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.1e-26 125.9 99 59.6
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.6e-19 102.1 106 53.8
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.6e-19 102.1 106 53.8
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 8.1e-19 99.8 106 52.8
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 8.1e-19 99.8 106 52.8
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.6e-17 93.2 68 69.1
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.4e-15 88.2 113 41.6
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.3e-10 70.5 67 61.2
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 5.8e-09 67.0 283 23.7
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.7e-08 65.5 295 23.4
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.7e-08 65.5 345 23.5
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 2.9e-08 64.7 290 24.1
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.8e-08 64.3 287 23.0
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 1.9e-07 62.0 290 24.8
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 1.9e-07 62.0 278 21.6
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 3.2e-07 61.2 319 22.9
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 3.2e-07 61.2 290 23.1
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 5.4e-07 60.5 340 22.9
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 9.3e-07 59.7 283 23.0
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 9.3e-07 59.7 283 23.0
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 1.2e-06 59.3 294 21.4
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 1.6e-06 58.9 325 23.7
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 2.1e-06 58.5 278 22.3
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 7.9e-06 56.6 213 28.6


User provided reference genes

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