Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1004 Trochodendron aralioides HOM05D005669 ORTHO05D030847 3.6e-49 198.0 102 100.0
TAR628G1623 Trochodendron aralioides HOM05D005669 ORTHO05D007632 5.4e-29 131.0 88 78.4
Nn5g31030 Nelumbo nucifera HOM05D005669 ORTHO05D007632 6.1e-25 117.5 88 72.7
CSS0001195 Camellia sinensis var. sinensis HOM05D005669 ORTHO05D007632 2.3e-24 115.5 88 69.3
Actinidia37907 Actinidia chinensis HOM05D005669 ORTHO05D007632 5.2e-24 114.4 88 68.2
Duzib093G1476 Durio zibethinus HOM05D005669 ORTHO05D007632 2.8e-22 108.6 88 64.8
Cfa014128 Carpinus fangiana HOM05D005669 ORTHO05D007632 1.4e-21 106.3 89 65.2
Haze_10379 Corylus avellana HOM05D005669 ORTHO05D007632 4.1e-21 104.8 89 64.0
Thecc.05G147000 Theobroma cacao HOM05D005669 ORTHO05D007632 4.1e-21 104.8 88 61.4
QL02p015311 Quercus lobata HOM05D005669 ORTHO05D007632 7.0e-21 104.0 88 61.4
Haze_22850 Corylus avellana HOM05D005669 ORTHO05D007632 1.2e-20 103.2 89 62.9
PGR031G0991 Punica granatum HOM05D005669 ORTHO05D007632 1.6e-20 102.8 92 62.0
Atru.chr13.76 Acer truncatum HOM05D005669 ORTHO05D007632 2.7e-20 102.1 88 58.0
FAN27G1463 Fragaria x ananassa HOM05D005669 ORTHO05D007632 1.0e-19 100.1 89 64.0
Potri.005G255500 Populus trichocarpa HOM05D005669 ORTHO05D007632 1.0e-19 100.1 88 58.0
vmacro04423 Vaccinium macrocarpon HOM05D005669 ORTHO05D007632 1.0e-19 100.1 91 61.5
Cpa.g.sc26.145 Carica papaya HOM05D005669 ORTHO05D007632 1.3e-19 99.8 88 61.4
RcHm_v2.0_Chr6g0295721 Rosa chinensis HOM05D005669 ORTHO05D007632 1.3e-19 99.8 89 64.0
FvH4_2g26870 Fragaria vesca HOM05D005669 ORTHO05D007632 2.3e-19 99.0 89 62.9
Sabra02G0004300 Salix brachista HOM05D005669 ORTHO05D007632 3.8e-19 98.2 88 55.7
VMungo0251G0358 Vigna mungo HOM05D005669 ORTHO05D007632 5.0e-19 97.8 91 62.6
Ciclev10000240m.g Citrus clementina HOM05D005669 ORTHO05D007632 6.6e-19 97.4 88 62.5
FAN20G0946 Fragaria x ananassa HOM05D005669 ORTHO05D007632 8.6e-19 97.1 89 61.8
Glyma.05G243200 Glycine max HOM05D005669 ORTHO05D007632 8.6e-19 97.1 91 60.4
Lj4P811T82 Lonicera japonica HOM05D005669 ORTHO05D007632 1.1e-18 96.7 89 62.9
MBI14_g18952_MAGBIO Magnolia biondii HOM05D005669 ORTHO05D007632 1.5e-18 96.3 88 62.5
arahy.Tifrunner.gnm1.ann1.7LZL5F Arachis hypogaea HOM05D005669 ORTHO05D007632 1.9e-18 95.9 91 60.4
Potri.002G006100 Populus trichocarpa HOM05D005669 ORTHO05D007632 1.9e-18 95.9 88 55.7
CiPaw.07G134500 Carya illinoinensis HOM05D005669 ORTHO05D007632 3.3e-18 95.1 91 60.4
arahy.Tifrunner.gnm1.ann1.Y01VEH Arachis hypogaea HOM05D005669 ORTHO05D007632 4.3e-18 94.7 91 59.3
Dinv31980 Davidia involucrata HOM05D005669 ORTHO05D007632 5.6e-18 94.4 75 68.0
Manes.05G126500 Manihot esculenta HOM05D005669 ORTHO05D007632 7.3e-18 94.0 88 56.8
Prupe.1G498000 Prunus persica HOM05D005669 ORTHO05D007632 7.3e-18 94.0 90 60.0
Eucgr.F03586 Eucalyptus grandis HOM05D005669 ORTHO05D007632 9.5e-18 93.6 90 58.9
Gohir.A04G091400 Gossypium hirsutum HOM05D005669 ORTHO05D007632 9.5e-18 93.6 90 61.1
Gorai.012G107400 Gossypium raimondii HOM05D005669 ORTHO05D007632 9.5e-18 93.6 90 61.1
TWI56G0116 Tripterygium wilfordii HOM05D005669 ORTHO05D007632 9.5e-18 93.6 88 58.0
Atru.chr13.287 Acer truncatum HOM05D005669 ORTHO05D007632 1.2e-17 93.2 90 60.0
Gohir.D04G124200 Gossypium hirsutum HOM05D005669 ORTHO05D007632 1.2e-17 93.2 90 61.1
Rhsim07G0256400 Rhododendron simsii HOM05D005669 ORTHO05D007632 2.8e-17 92.0 91 60.4
Sabra05G0198000 Salix brachista HOM05D005669 ORTHO05D007632 3.6e-17 91.7 89 57.3
Sc26g0004730 Simmondsia chinensis HOM05D005669 ORTHO05D007632 3.6e-17 91.7 88 60.2
Phvul.002G326900 Phaseolus vulgaris HOM05D005669 ORTHO05D007632 4.7e-17 91.3 91 59.3
Aqoxy6G01556 Aquilegia oxysepala HOM05D005669 ORTHO05D007632 6.1e-17 90.9 88 58.0
Cc10_g00330 Coffea canephora HOM05D005669 ORTHO05D007632 8.0e-17 90.5 90 56.7
Glyma.08G051000 Glycine max HOM05D005669 ORTHO05D007632 1.8e-16 89.4 94 59.6
CANSAT56G1505 Cannabis sativa HOM05D005669 ORTHO05D007632 4.0e-16 88.2 90 55.6
ClCG11G018950 Citrullus lanatus HOM05D005669 ORTHO05D007632 6.8e-16 87.4 93 53.8
CsaV3_4G037550 Cucumis sativus L. HOM05D005669 ORTHO05D007632 1.2e-15 86.7 93 54.8
CAN.G1781.6 Capsicum annuum HOM05D005669 ORTHO05D007632 1.5e-15 86.3 92 55.4
Lj2g0000882 Lotus japonicus HOM05D005669 ORTHO05D007632 1.5e-15 86.3 94 53.2
MD08G1162900 Malus domestica HOM05D005669 ORTHO05D007632 1.5e-15 86.3 93 57.0
Ah.11g045150 Amaranthus hybridus HOM05D005669 ORTHO05D007632 2.6e-15 85.5 99 53.5
COL.COLO4_36509 Corchorus olitorius HOM05D005669 ORTHO05D007632 7.5e-15 84.0 94 59.6
Lj4g0027418 Lotus japonicus HOM05D005669 ORTHO05D007632 7.5e-15 84.0 96 55.2
Nitab4.5_0012070g0010 Nicotiana tabacum HOM05D005669 ORTHO05D007632 9.8e-15 83.6 91 56.0
MD15G1349600 Malus domestica HOM05D005669 ORTHO05D030847 1.7e-14 82.8 93 54.8
Medtr8g106680 Medicago truncatula HOM05D005669 ORTHO05D007632 3.7e-14 81.6 94 56.4
MELO3C017049.2 Cucumis melo HOM05D005669 ORTHO05D007632 4.9e-14 81.3 93 51.6
Lalb_Chr05g0221901 Lupinus albus HOM05D005669 ORTHO05D007632 1.1e-13 80.1 90 52.2
EL10Ac1g01890 Beta vulgaris HOM05D005669 ORTHO05D007632 1.4e-13 79.7 89 55.1
PGSC0003DMG400014391 Solanum tuberosum HOM05D005669 ORTHO05D007632 1.4e-13 79.7 93 52.7
PSO675G5095 Papaver somniferum HOM05D005669 ORTHO05D007632 3.2e-13 78.6 88 53.4
Solyc10g006330.3 Solanum lycopersicum HOM05D005669 ORTHO05D007632 3.2e-13 78.6 92 52.2
Sopen10g002280 Solanum pennellii HOM05D005669 ORTHO05D007632 3.2e-13 78.6 92 52.2
Actinidia33595 Actinidia chinensis HOM05D005669 ORTHO05D030847 4.1e-13 78.2 64 65.6
PSO541G5566 Papaver somniferum HOM05D005669 ORTHO05D007632 4.1e-13 78.2 95 51.6
Ca_25308_v3 Cicer arietinum L. HOM05D005669 ORTHO05D007632 1.6e-12 76.3 91 51.6
Glyma.16G206400 Glycine max HOM05D005669 ORTHO05D007632 1.6e-12 76.3 88 52.3
Lalb_Chr24g0398011 Lupinus albus HOM05D005669 ORTHO05D007632 1.6e-12 76.3 89 49.4
TWI12G0088 Tripterygium wilfordii HOM05D005669 ORTHO05D007632 1.6e-12 76.3 83 53.0
TPR.G7965 Trifolium pratense HOM05D005669 ORTHO05D007632 2.7e-12 75.5 92 48.9
MSTRG.24914 Avicennia marina HOM05D005669 ORTHO05D007632 4.6e-12 74.7 88 51.1
PSO170G6908 Papaver somniferum HOM05D005669 ORTHO05D007632 4.6e-12 74.7 88 46.6
GSVIVG01013417001 Vitis vinifera HOM05D005669 ORTHO05D007632 4.6e-12 74.7 64 65.6
Migut.C00359 Erythranthe guttata HOM05D005669 ORTHO05D007632 6.0e-12 74.3 95 54.7
PSO357G0659 Papaver somniferum HOM05D005669 ORTHO05D007632 1.0e-11 73.6 88 45.5
Sed0011906 Sechium edule HOM05D005669 ORTHO05D007632 1.0e-11 73.6 88 51.1
TPR.G12831 Trifolium pratense HOM05D005669 ORTHO05D007632 1.0e-11 73.6 95 52.6
Psat7g004160 Pisum sativum HOM05D005669 ORTHO05D007632 1.7e-11 72.8 95 51.6
Medtr6g080430 Medicago truncatula HOM05D005669 ORTHO05D007632 2.3e-11 72.4 92 47.8
Psat1g033840 Pisum sativum HOM05D005669 ORTHO05D007632 2.3e-11 72.4 92 51.1
Ca_17223_v3 Cicer arietinum L. HOM05D005669 ORTHO05D007632 3.9e-11 71.6 92 52.2
VMungo0464G1382 Vigna mungo HOM05D005669 ORTHO05D007632 6.6e-11 70.9 89 50.6
Phvul.004G130100 Phaseolus vulgaris HOM05D005669 ORTHO05D007632 8.6e-11 70.5 89 50.6
SalBow7G1312 Salvia bowleyana HOM05D005669 ORTHO05D007632 1.5e-10 69.7 94 47.9
CARHR035190 Cardamine hirsuta HOM05D005669 ORTHO05D007632 5.6e-10 67.8 88 50.0
AUR62024103 Chenopodium quinoa HOM05D005669 ORTHO05D007632 1.2e-09 66.6 94 51.1
AL1G51380 Arabidopsis lyrata HOM05D005669 ORTHO05D007632 1.6e-09 66.2 88 48.9
AT1G42550 Arabidopsis thaliana HOM05D005669 ORTHO05D007632 1.6e-09 66.2 88 48.9
CDE02G1479 Ceratophyllum demersum HOM05D005669 ORTHO05D007632 1.6e-09 66.2 88 44.3
CDE04G2203 Ceratophyllum demersum HOM05D005669 ORTHO05D007632 2.1e-09 65.9 88 43.2
HanXRQChr14g0427911 Helianthus annuus HOM05D005669 ORTHO05D007632 2.1e-09 65.9 90 47.8
MSTRG.1001 Avicennia marina HOM05D005669 ORTHO05D007632 4.7e-09 64.7 90 47.8
Carub.0001s3430 Capsella rubella HOM05D005669 ORTHO05D007632 6.2e-09 64.3 88 47.7
Nitab4.5_0000119g0330 Nicotiana tabacum HOM05D005669 ORTHO05D007632 6.2e-09 64.3 90 47.8
DCAR_020086 Daucus carota HOM05D005669 ORTHO05D007632 8.0e-09 63.9 88 43.2
Thhalv10003646m.g Eutrema salsugineum HOM05D005669 ORTHO05D007632 8.0e-09 63.9 88 47.7
Glyma.09G155700 Glycine max HOM05D005669 ORTHO05D007632 8.0e-09 63.9 89 49.4
Sp1g37310 Schrenkiella parvula HOM05D005669 ORTHO05D007632 1.1e-08 63.5 88 47.7
BolC8t47774H Brassica oleracea HOM05D005669 ORTHO05D007632 1.4e-08 63.2 88 46.6
BcaB04g17779 Brassica carinata HOM05D005669 ORTHO05D007632 1.8e-08 62.8 88 45.5
AUR62035163 Chenopodium quinoa HOM05D005669 ORTHO05D007632 2.3e-08 62.4 94 50.0
A08p07670 Brassica napus HOM05D005669 ORTHO05D007632 3.1e-08 62.0 88 46.6
BraA08t32781Z Brassica rapa HOM05D005669 ORTHO05D007632 3.1e-08 62.0 88 46.6
Ah.03g148510 Amaranthus hybridus HOM05D005669 ORTHO05D007632 1.5e-07 59.7 86 46.5
Lsat_1_v5_gn_2_2161 Lactuca sativa HOM05D005669 ORTHO05D007632 1.5e-07 59.7 89 43.8
BcaC07g37454 Brassica carinata HOM05D005669 ORTHO05D007632 2.6e-07 58.9 88 45.5
C08p09250 Brassica napus HOM05D005669 ORTHO05D007632 2.6e-07 58.9 88 45.5
ATR0807G083 Amborella trichopoda HOM05D005669 ORTHO05D007632 5.8e-07 57.8 88 48.9
ECA238G3105 Erigeron canadensis HOM05D005669 ORTHO05D007632 9.8e-07 57.0 88 44.3
THA.LOC104813177 Tarenaya hassleriana HOM05D005669 ORTHO05D007632 9.8e-07 57.0 92 43.5
unitig_32.g11141 Utricularia gibba HOM05D005669 ORTHO05D007632 1.3e-06 56.6 92 46.7
Aa31sc286G30 Aethionema arabicum HOM05D005669 ORTHO05D007632 8.3e-06 53.9 90 44.4


User provided reference genes

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