Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.3e-185 652.9 328 100.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 5.0e-169 597.8 328 90.2
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.1e-167 592.4 328 89.6
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.6e-167 591.7 326 89.6
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.4e-163 579.7 327 86.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.4e-163 579.7 327 87.5
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.1e-163 578.2 327 86.9
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 4.1e-163 578.2 328 86.0
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.2e-162 576.6 326 86.2
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.0e-162 575.9 327 86.2
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 2.0e-162 575.9 327 86.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.0e-161 573.5 332 86.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.3e-161 573.2 332 86.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.9e-161 572.0 327 85.0
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.9e-160 569.3 329 84.8
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.5e-160 568.9 328 83.5
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.5e-160 568.9 326 85.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 4.2e-160 568.2 328 85.1
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 5.5e-160 567.8 333 85.3
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 9.4e-160 567.0 327 84.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.6e-159 566.2 326 84.7
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.6e-159 566.2 327 84.4
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.1e-159 565.8 328 85.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 8.0e-159 563.9 325 83.7
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.0e-158 563.5 329 83.6
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 6.7e-158 560.8 325 83.4
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 6.7e-158 560.8 320 85.6
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 8.8e-158 560.5 319 85.9
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.0e-157 559.3 330 83.6
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.0e-157 559.3 327 84.1
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 9.7e-157 557.0 327 83.5
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.3e-156 556.6 316 85.1
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.8e-156 555.4 326 83.4
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 6.3e-156 554.3 329 84.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 8.2e-156 553.9 327 82.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 8.2e-156 553.9 326 82.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.4e-155 553.1 326 82.2
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.8e-155 552.7 327 82.3
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.8e-155 552.7 337 81.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 9.1e-155 550.4 322 82.3
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.1e-155 550.4 325 82.2
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.0e-154 549.3 325 82.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.7e-154 548.9 338 80.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.7e-154 548.9 339 80.2
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-154 548.9 362 76.0
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 5.9e-154 547.7 326 82.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-153 547.0 320 82.5
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.3e-153 546.6 370 73.8
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.7e-153 546.2 337 80.4
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.9e-153 545.4 328 81.1
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 5.0e-153 544.7 324 82.1
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 6.5e-153 544.3 321 83.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 6.5e-153 544.3 324 82.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 8.5e-153 543.9 338 79.6
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 8.5e-153 543.9 338 79.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.5e-152 542.3 324 81.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.5e-152 542.3 324 81.2
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 5.5e-152 541.2 332 79.5
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 9.4e-152 540.4 319 83.4
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.2e-151 540.0 324 81.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.1e-151 539.3 326 79.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.6e-151 538.5 324 80.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 3.6e-151 538.5 327 79.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.1e-151 537.7 365 73.4
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-150 537.0 333 79.3
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.0e-150 537.0 317 83.0
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.4e-150 536.6 327 79.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.0e-150 535.4 320 81.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.0e-150 535.4 325 80.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.0e-150 535.0 322 80.1
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 5.2e-150 534.6 328 80.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 6.8e-150 534.3 317 83.3
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.2e-149 533.5 333 79.0
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 3.4e-149 531.9 371 72.8
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.3e-148 530.0 323 80.2
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.2e-148 529.3 315 84.1
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-148 529.3 333 78.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 6.3e-148 527.7 328 79.0
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 8.3e-148 527.3 325 78.5
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-147 526.9 317 82.6
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-147 526.9 317 82.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.4e-147 526.6 330 77.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.8e-147 526.2 395 70.9
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 5.4e-147 524.6 326 79.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 5.4e-147 524.6 328 78.0
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.9e-146 521.2 330 79.4
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.3e-145 520.0 320 77.2
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.7e-145 519.6 304 83.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 4.7e-143 511.5 320 77.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.0e-141 506.1 322 76.7
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.2e-140 502.7 325 75.1
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.3e-137 492.7 339 74.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.9e-136 489.6 316 76.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 4.7e-135 485.0 321 73.5
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.2e-134 481.5 328 73.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.4e-131 473.4 323 71.5
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.7e-129 466.5 320 72.2
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 8.0e-127 457.6 332 67.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 3.4e-125 452.2 250 88.8
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.0e-122 443.0 334 72.5
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.3e-121 440.3 249 86.3
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.3e-121 439.5 243 87.7
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 6.6e-121 438.0 248 85.1
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 6.6e-121 438.0 250 83.6
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.4e-117 425.6 332 67.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-115 420.6 303 71.3
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 9.2e-115 417.5 363 63.6
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.9e-112 409.8 325 64.9
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.7e-108 395.6 242 77.3
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 3.2e-99 365.9 318 59.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 2.4e-91 339.7 198 82.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.0e-90 335.1 232 71.6
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-77 292.7 216 72.2
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.6e-72 274.6 319 46.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 6.5e-68 261.9 178 70.8
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.5e-67 258.8 263 50.2
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 8.7e-65 251.5 136 88.2
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.4e-62 244.2 343 44.3
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 6.9e-62 241.9 134 84.3
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.9e-60 236.5 168 69.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.4e-59 234.2 130 84.6
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-44 184.9 126 71.4
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.9e-44 183.3 126 70.6
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 8.0e-42 175.3 122 69.7
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-40 171.0 119 69.7
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-40 171.0 119 69.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-40 171.0 120 71.7
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 3.3e-40 169.9 100 82.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.7e-39 167.5 119 68.1
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-35 154.1 162 48.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.2e-35 152.9 209 49.3
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-32 144.4 107 69.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.1e-27 128.3 89 68.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.8e-26 123.6 73 82.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 4.4e-24 116.3 198 43.9
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.8e-22 110.9 78 69.2
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 2.4e-22 110.5 69 81.2
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 5.0e-20 102.8 68 70.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 2.5e-19 100.5 66 75.8
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.8e-17 94.4 79 58.2
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 5.2e-17 92.8 62 74.2
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-16 91.7 61 73.8
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.1e-14 85.1 47 85.1
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 5.6e-11 72.8 51 68.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.2e-10 71.6 52 69.2
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 2.3e-09 67.4 54 66.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 4.4e-08 63.2 53 62.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 2.2e-07 60.8 163 30.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.7e-07 60.1 164 28.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 3.7e-07 60.1 164 28.0


User provided reference genes

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