Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 0.0e+00 1131.3 593 100.0
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 0.0e+00 1075.8 593 94.1
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.3e-297 1025.0 597 89.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.5e-293 1012.3 593 88.2
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.2e-291 1004.6 593 86.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.4e-291 1003.8 593 86.2
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.2e-290 1002.7 593 86.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.9e-288 995.3 585 87.2
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.8e-286 988.8 596 85.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.4e-286 988.4 598 84.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 6.9e-286 986.9 594 84.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.2e-285 986.1 594 85.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.0e-285 985.3 595 86.1
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.4e-285 984.6 595 83.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.3e-284 982.6 598 86.3
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 5.5e-283 977.2 596 84.6
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 7.1e-283 976.9 595 84.7
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.6e-282 975.7 594 84.3
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.1e-282 975.3 593 84.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.1e-282 975.3 594 83.7
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 3.5e-282 974.5 598 84.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.0e-282 973.8 595 85.0
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.0e-281 973.0 595 84.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.4e-278 961.8 594 83.2
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.8e-277 957.2 608 81.4
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-276 956.1 594 82.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-276 956.1 594 82.7
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.9e-276 954.1 597 82.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 4.9e-276 954.1 588 82.7
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 7.1e-275 950.3 594 83.8
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 9.3e-275 949.9 596 82.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.7e-274 948.3 598 81.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.0e-273 944.9 596 81.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.7e-273 943.7 605 77.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 8.7e-273 943.3 600 81.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.1e-272 943.0 594 82.2
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-272 942.2 605 77.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.7e-272 940.6 606 80.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 6.9e-270 933.7 598 80.6
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 9.0e-270 933.3 596 81.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.5e-269 932.6 597 79.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.0e-269 932.2 602 79.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.0e-269 932.2 600 79.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.4e-269 931.4 600 79.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.5e-269 931.0 602 79.1
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 4.5e-269 931.0 593 80.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 7.6e-269 930.2 598 80.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.6e-269 930.2 602 79.2
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.7e-268 929.1 600 79.2
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.9e-268 928.3 600 78.8
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.4e-267 926.0 595 80.8
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 4.2e-267 924.5 594 80.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.5e-267 924.1 602 78.7
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 7.2e-267 923.7 594 80.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.0e-265 919.8 594 80.0
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.9e-265 917.9 594 79.3
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 8.7e-265 916.8 594 80.3
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-264 915.6 600 78.0
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.3e-263 912.9 594 80.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.6e-263 912.5 601 78.2
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.8e-263 911.8 611 78.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.1e-262 907.9 608 77.8
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.9e-261 904.0 607 77.4
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.7e-260 902.5 602 77.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.0e-260 901.0 594 77.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.0e-260 901.0 594 77.4
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-258 896.3 597 77.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.2e-258 896.3 596 77.9
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.6e-258 894.4 586 78.7
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 6.1e-258 894.0 600 77.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.9e-258 893.6 602 76.9
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.0e-257 891.7 605 77.2
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 3.0e-257 891.7 593 76.6
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-256 889.0 594 76.6
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-256 889.0 594 76.6
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.0e-256 889.0 594 76.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.3e-256 888.3 592 76.5
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.7e-256 887.5 599 76.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.8e-255 885.2 596 78.4
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 3.7e-255 884.8 598 77.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.8e-255 884.4 604 76.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 3.1e-254 881.7 598 76.6
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 5.3e-254 880.9 602 76.1
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 6.9e-254 880.6 601 76.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.5e-252 874.0 602 74.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 8.5e-252 873.6 594 75.3
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.4e-251 872.8 606 75.7
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-251 872.8 594 76.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 4.2e-251 871.3 594 74.9
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.0e-249 866.7 593 75.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.4e-249 866.3 616 73.9
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.8e-249 865.9 592 75.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 4.4e-248 861.3 593 75.9
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.4e-248 860.5 610 73.9
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 8.2e-247 857.1 596 74.5
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 8.2e-247 857.1 597 74.7
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.8e-246 855.9 592 74.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.0e-244 847.8 593 74.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.1e-243 846.7 597 73.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.7e-242 842.0 592 74.0
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 5.2e-241 837.8 605 72.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 9.7e-240 833.6 602 72.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.7e-239 832.8 601 72.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 3.7e-239 831.6 595 74.5
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.6e-237 826.2 598 73.6
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-236 823.2 546 77.3
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-236 821.2 547 75.1
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.0e-233 812.0 612 71.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.2e-233 811.2 612 69.9
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-232 810.1 600 71.8
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 7.5e-232 807.4 645 68.2
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.1e-230 801.6 869 54.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 7.0e-230 800.8 606 70.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.0e-225 785.0 616 66.4
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.4e-224 781.9 595 71.3
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 6.3e-223 777.7 597 68.7
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.8e-222 776.2 593 70.7
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.8e-220 768.5 602 67.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.2e-209 731.5 566 68.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-195 686.8 476 75.0
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-182 643.7 492 70.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-181 639.8 598 61.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.1e-178 629.8 519 67.2
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.6e-162 577.0 603 52.9
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 6.9e-161 571.6 595 51.8
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.5e-157 559.3 597 53.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.9e-143 513.1 600 51.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.4e-134 484.2 615 45.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.7e-133 479.9 584 47.1
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-89 335.1 209 78.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-87 328.2 243 68.3
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 5.1e-87 326.2 324 54.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.1e-79 299.7 233 72.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.3e-74 285.0 635 33.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.6e-72 276.6 268 58.6
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.1e-60 237.3 584 31.0
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.0e-51 208.0 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.2e-48 198.7 151 70.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.2e-34 151.4 201 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 3.2e-33 147.5 98 71.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.5e-30 138.7 625 23.7
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 5.9e-27 126.7 78 78.2
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 7.2e-25 119.8 212 49.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 7.9e-24 116.3 78 69.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.7e-23 113.2 78 67.9
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 5.0e-18 97.1 115 43.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 4.4e-14 84.0 90 51.1
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.1e-12 79.3 93 45.2
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.3e-12 77.0 59 66.1


User provided reference genes

Program Settings