Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 9.8e-169 596.7 290 100.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.4e-151 538.9 289 91.3
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.6e-140 501.1 290 83.1
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.0e-137 492.7 286 83.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-133 479.6 291 80.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-133 479.6 291 80.1
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 2.3e-133 479.2 292 79.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.9e-132 476.1 291 78.7
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.5e-132 475.7 292 79.5
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.6e-131 473.0 291 79.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.1e-131 472.6 291 78.4
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-131 472.6 291 78.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.8e-131 471.5 290 79.3
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.8e-131 471.5 288 78.8
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.1e-131 470.7 291 79.0
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.1e-130 470.3 291 79.0
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.8e-130 469.5 290 79.3
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.8e-130 469.5 328 72.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 5.3e-130 468.0 290 78.6
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 6.9e-130 467.6 291 78.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.9e-130 467.6 291 77.3
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 3.4e-129 465.3 290 78.3
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.4e-129 464.9 288 77.8
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 4.4e-129 464.9 289 77.9
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 7.6e-129 464.2 292 76.4
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 7.6e-129 464.2 292 76.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.9e-128 462.2 289 78.9
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 6.4e-128 461.1 290 75.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.1e-127 460.3 291 76.6
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.4e-127 459.9 291 77.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.2e-127 458.8 285 77.5
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 4.2e-127 458.4 291 76.6
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 5.4e-127 458.0 290 77.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.4e-127 458.0 291 77.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 7.1e-127 457.6 285 77.2
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 9.3e-127 457.2 301 75.7
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.2e-126 456.8 288 78.1
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.2e-126 456.8 285 77.2
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.6e-126 456.4 291 75.3
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 2.1e-126 456.1 292 77.7
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.7e-126 455.7 291 74.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.7e-126 455.7 285 76.1
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 4.6e-126 454.9 290 76.9
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 7.9e-126 454.1 291 77.0
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.7e-125 453.0 291 74.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.3e-125 452.6 285 75.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.3e-125 452.6 296 74.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 6.6e-125 451.1 283 77.0
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.1e-124 450.3 284 77.1
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.1e-124 450.3 285 75.4
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.1e-124 450.3 285 75.4
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.9e-124 449.5 289 74.4
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.5e-124 449.1 286 75.5
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 3.3e-124 448.7 284 76.1
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.4e-124 447.6 285 74.7
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 9.6e-124 447.2 281 78.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.3e-123 446.8 323 69.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.6e-123 446.4 286 74.5
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.1e-123 446.0 289 72.7
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.6e-123 445.3 283 74.6
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.1e-123 444.1 291 74.9
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.4e-122 443.4 286 74.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.8e-122 443.0 286 73.8
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.1e-122 442.2 291 73.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.3e-122 441.4 285 74.0
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.0e-121 439.5 288 73.6
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.6e-121 439.1 286 74.1
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 7.6e-121 437.6 301 72.1
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.9e-120 435.6 253 83.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.8e-120 435.3 290 72.8
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.8e-120 435.3 286 72.7
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 6.4e-120 434.5 290 72.8
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.4e-120 434.1 288 74.7
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.1e-119 433.7 288 73.3
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.1e-119 433.7 285 73.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.4e-119 433.3 283 73.9
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 9.3e-119 430.6 253 81.4
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 2.3e-117 426.0 294 73.5
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.9e-117 425.2 288 71.9
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.9e-116 422.9 291 70.4
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.9e-116 422.9 292 71.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.5e-116 422.5 325 66.5
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.5e-116 422.5 325 66.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.3e-115 420.2 287 71.8
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 2.1e-115 419.5 288 71.9
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 6.2e-115 417.9 286 70.3
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 8.1e-115 417.5 287 70.0
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.1e-114 417.2 288 72.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.1e-114 415.6 287 69.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.9e-114 414.5 291 69.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.9e-114 414.5 287 71.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 9.0e-114 414.1 287 71.4
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.2e-113 413.7 283 69.6
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.5e-113 413.3 287 72.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.6e-113 412.5 287 71.1
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.4e-113 412.1 291 69.8
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.4e-113 412.1 290 70.0
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.9e-112 409.1 287 70.7
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.9e-112 409.1 260 77.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.2e-111 405.2 252 77.0
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.6e-110 403.3 303 67.7
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.1e-107 392.9 288 67.4
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.8e-107 392.5 232 81.0
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.4e-106 390.2 253 74.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 5.3e-106 388.3 253 75.1
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.5e-105 386.7 281 66.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.4e-105 385.6 290 66.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.9e-101 372.1 279 65.2
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 7.7e-97 357.8 207 84.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.0e-96 357.5 241 70.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.7e-96 356.7 289 63.7
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.7e-96 356.7 258 68.2
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.2e-96 356.3 285 62.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.3e-93 346.3 285 61.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.3e-92 342.4 279 60.2
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.9e-88 329.3 284 56.3
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.2e-86 323.9 283 59.0
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 8.2e-83 311.2 291 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 6.5e-80 301.6 237 61.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.3e-76 289.3 228 68.0
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.3e-72 277.3 169 77.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 6.1e-70 268.5 187 69.0
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.8e-59 233.0 299 47.2
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 8.9e-53 211.5 262 43.9
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.9e-51 206.5 130 74.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.0e-46 188.3 151 66.2
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.1e-45 186.4 276 39.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.7e-41 173.3 150 60.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.9e-39 167.2 152 57.9
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 9.5e-39 164.9 150 58.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-35 153.7 137 59.9
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 2.2e-35 153.7 114 64.0
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.5e-31 140.2 169 45.6
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.5e-31 138.3 264 31.4
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 4.0e-29 132.9 368 28.5
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-28 130.6 94 68.1
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 4.9e-27 125.9 82 72.0
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.1e-25 120.6 116 56.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.0e-24 116.7 86 69.8
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 9.6e-23 111.7 99 55.6
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 1.8e-21 107.5 66 71.2
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.1e-18 98.2 79 62.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-17 94.0 144 41.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.7e-17 93.6 67 68.7
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-16 91.7 60 73.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.3e-15 86.3 213 32.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 9.6e-15 85.1 88 51.1
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 9.6e-15 85.1 88 51.1
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.1e-14 84.0 92 48.9
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 4.8e-14 82.8 92 50.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.8e-14 82.8 46 76.1
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 6.2e-14 82.4 109 46.8
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 8.1e-14 82.0 46 76.1
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 8.1e-14 82.0 46 76.1
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.1e-13 80.1 56 67.9
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.0e-13 79.7 187 28.9
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-11 74.7 46 69.6
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.9e-11 72.8 122 42.6
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.3e-10 68.6 42 81.0
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.5e-09 66.6 48 64.6
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 6.7e-08 62.4 47 66.0
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 3.3e-07 60.1 47 63.8
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.3e-06 58.2 46 65.2


User provided reference genes

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