Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.9e-295 1016.1 498 100.0
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.3e-249 864.8 468 91.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.3e-240 836.3 489 83.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.2e-238 829.7 479 82.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.5e-238 827.8 481 83.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 7.7e-238 827.0 498 80.7
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 5.1e-234 814.3 485 82.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.3e-232 809.7 485 81.0
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.0e-230 802.4 487 81.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.4e-230 801.6 474 82.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 5.9e-230 800.8 482 80.1
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 5.9e-230 800.8 476 80.9
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.2e-229 798.9 477 81.3
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 5.0e-229 797.7 474 81.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.5e-229 797.0 477 81.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.5e-228 795.4 474 81.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 5.5e-228 794.3 486 78.8
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 9.4e-228 793.5 482 80.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.2e-227 793.1 476 80.3
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.2e-227 793.1 470 82.3
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.6e-227 792.7 486 79.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.1e-227 790.8 477 80.5
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 6.1e-227 790.8 469 81.0
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 6.1e-227 790.8 482 80.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.3e-226 788.9 478 80.1
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.9e-226 788.1 475 80.0
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.8e-226 786.9 467 80.7
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.1e-225 786.6 482 78.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-225 786.6 471 81.3
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.4e-225 784.6 471 81.1
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 7.4e-225 783.9 475 79.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 7.4e-225 783.9 476 79.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.3e-224 783.1 482 78.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.7e-224 781.6 480 78.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 3.7e-224 781.6 472 80.3
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.1e-223 780.0 477 78.6
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.0e-222 775.8 465 79.8
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-222 775.0 465 80.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 3.5e-222 775.0 472 78.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-221 772.7 465 79.4
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.9e-221 771.9 478 79.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.9e-220 769.2 472 78.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.1e-219 765.8 477 75.3
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.7e-219 765.4 469 77.6
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.7e-218 760.8 477 74.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.6e-217 758.8 476 78.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.2e-216 755.7 457 79.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 6.3e-216 754.2 469 79.5
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 7.0e-215 750.7 469 76.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.2e-214 750.0 471 76.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 5.9e-214 747.7 474 75.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.2e-213 745.7 482 75.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.2e-213 745.7 477 75.3
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.2e-212 741.5 482 76.3
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 5.5e-212 741.1 434 82.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-211 739.6 460 77.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.1e-211 739.2 485 73.8
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 6.1e-211 737.6 485 73.6
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.1e-211 737.6 485 73.6
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.8e-210 736.1 439 79.3
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 3.0e-210 735.3 480 76.2
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.2e-209 733.4 449 77.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.8e-208 728.8 471 75.2
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.4e-207 726.5 549 66.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.4e-207 726.5 426 82.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.0e-205 718.0 477 73.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.0e-202 710.3 478 73.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.8e-202 709.5 468 73.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.0e-202 708.4 478 72.6
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.2e-201 706.8 479 72.7
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.8e-201 703.7 416 81.0
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.2e-200 702.6 475 71.2
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.8e-200 702.2 471 73.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-199 700.3 498 69.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.1e-199 700.3 473 74.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 4.5e-198 694.9 473 73.2
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-197 693.7 467 73.4
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.3e-196 688.7 474 72.8
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.2e-196 688.3 477 72.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.6e-195 685.3 478 72.0
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.8e-194 682.9 472 72.7
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 5.2e-194 681.4 427 75.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.8e-194 681.0 473 71.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.2e-193 680.2 471 72.2
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.5e-193 679.9 472 72.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.0e-193 679.5 477 71.7
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 4.4e-193 678.3 474 71.5
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 7.5e-193 677.6 473 71.0
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.3e-192 674.5 472 71.8
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.3e-192 674.5 482 69.5
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.1e-191 673.7 479 71.8
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.4e-191 673.3 474 72.6
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 3.2e-191 672.2 473 71.2
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.1e-191 671.8 515 64.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 7.0e-191 671.0 473 71.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.2e-191 670.6 473 71.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.2e-191 670.6 473 71.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.0e-190 669.5 471 72.2
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.9e-189 665.2 471 71.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.9e-189 665.2 470 70.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.1e-188 663.7 468 69.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 9.5e-188 660.6 473 68.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 3.6e-187 658.7 415 76.6
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.0e-186 657.1 546 63.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.7e-181 639.8 447 71.6
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-178 630.2 368 80.7
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.8e-177 624.8 491 63.7
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 8.6e-173 610.9 469 66.7
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.5e-172 609.4 481 66.5
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.9e-169 597.4 408 71.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-165 587.4 350 79.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.0e-162 575.5 509 58.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.4e-161 572.4 484 63.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.4e-161 572.4 363 76.9
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 5.1e-157 558.5 469 63.5
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.4e-154 550.4 475 60.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.4e-153 545.8 488 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.4e-138 497.3 471 53.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.5e-132 476.5 547 48.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-130 469.9 471 55.4
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.8e-123 446.4 270 77.0
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 4.8e-123 445.7 305 72.1
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-120 437.2 328 70.1
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.2e-110 404.4 238 81.5
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-97 361.3 285 68.4
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.5e-92 344.4 487 43.1
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.9e-88 330.1 203 76.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 8.8e-85 318.5 382 44.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.2e-83 313.9 274 60.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.4e-76 289.7 248 62.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.4e-76 289.7 487 35.9
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-70 270.4 266 51.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.4e-68 263.5 505 36.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-64 251.5 461 38.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.7e-64 251.1 458 38.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-56 224.2 174 66.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.9e-55 221.1 207 54.6
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.3e-55 219.9 181 61.9
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-54 217.6 288 45.8
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 3.4e-52 210.3 198 54.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.8e-51 206.8 111 87.4
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-50 203.4 111 85.6
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-49 201.4 111 84.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 7.8e-49 199.1 202 55.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.4e-43 179.5 107 79.4
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 8.4e-43 179.1 118 77.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.8e-41 172.6 111 75.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.3e-40 171.8 124 66.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-37 161.4 315 34.9
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.7e-35 154.8 122 59.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 8.7e-32 142.5 91 71.4
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.1e-31 142.1 104 64.4
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.6e-28 129.4 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 6.7e-24 116.3 125 54.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.8e-22 110.9 74 73.0
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 4.3e-15 87.0 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 4.8e-14 83.6 75 61.3
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.1e-09 68.2 43 76.7
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.8e-08 65.1 44 70.5
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.9e-08 63.9 44 68.2
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.9e-07 61.6 45 71.1
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.6e-06 58.5 46 63.0


User provided reference genes

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