Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 0.0e+00 1568.1 780 100.0
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.2e-174 615.9 805 46.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.1e-150 538.1 787 44.1
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 5.5e-150 535.8 804 43.3
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 6.7e-148 528.9 799 40.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 5.9e-144 515.8 802 40.1
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.6e-139 500.4 815 40.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.4e-139 500.0 793 39.6
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.5e-136 490.0 798 42.5
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 3.8e-135 486.5 797 38.9
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.1e-129 466.5 790 40.5
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.5e-126 457.2 800 37.4
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.8e-125 453.8 803 38.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.1e-125 452.6 800 37.4
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 7.5e-123 445.7 801 38.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 9.8e-123 445.3 807 40.1
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 4.3e-118 429.9 802 36.7
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.6e-118 429.5 829 35.6
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.6e-115 420.6 805 36.8
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.3e-111 408.3 811 35.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.1e-109 401.0 807 34.9
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.5e-107 394.8 545 44.6
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.4e-107 393.7 807 35.7
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.9e-106 390.6 811 35.0
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.9e-106 389.8 540 41.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.9e-105 387.9 726 39.1
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.9e-105 387.9 796 36.6
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.4e-105 386.3 795 35.2
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-103 382.1 788 35.7
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.5e-102 377.5 800 35.9
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.2e-101 375.2 398 51.8
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.1e-100 370.5 701 39.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 5.2e-100 369.8 675 38.5
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.2e-99 368.6 807 35.3
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.6e-99 367.5 764 34.4
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 5.4e-97 359.8 823 32.6
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.1e-96 357.8 628 38.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.3e-94 350.5 823 33.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.2e-91 342.0 701 36.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.9e-90 337.4 488 43.4
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 5.6e-86 323.2 711 33.8
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 8.1e-85 319.3 800 33.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 3.1e-84 317.4 811 32.4
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.6e-80 303.5 683 35.0
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-79 302.4 683 35.0
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.1e-78 298.9 681 35.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.6e-78 296.6 796 31.7
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 3.1e-76 290.8 786 30.7
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.0e-76 290.4 552 37.1
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.7e-74 285.0 790 30.0
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.9e-74 284.3 803 30.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.2e-73 280.4 797 29.4
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 4.2e-73 280.4 668 32.9
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.5e-73 280.0 804 31.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 4.3e-70 270.4 815 29.6
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 9.6e-70 269.2 531 35.8
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 9.6e-70 269.2 807 30.5
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.7e-69 267.3 806 30.0
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 4.8e-69 266.9 806 29.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.6e-67 261.2 808 30.3
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 3.4e-67 260.8 812 31.5
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.5e-67 260.4 608 33.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 5.8e-67 260.0 501 37.1
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 6.5e-66 256.5 482 37.3
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.1e-65 255.8 404 41.1
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.9e-65 255.0 825 29.7
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.1e-64 251.5 470 37.4
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.7e-64 251.1 526 34.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-63 248.1 397 41.1
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.0e-63 247.7 528 33.5
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 6.7e-63 246.5 468 35.7
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 8.7e-63 246.1 805 28.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.5e-62 245.4 793 29.3
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 9.7e-62 242.7 805 29.7
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 6.3e-61 240.0 572 34.8
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.8e-60 238.4 591 30.8
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.4e-57 228.8 604 32.1
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 8.8e-55 219.5 679 29.9
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 8.8e-55 219.5 695 30.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.5e-54 218.8 699 29.8
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.0e-54 218.4 378 39.7
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.0e-51 208.4 453 34.0
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.2e-50 204.9 634 31.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 5.0e-50 203.8 604 29.6
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.1e-48 196.8 487 32.0
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.3e-44 183.7 463 31.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.1e-40 170.2 442 33.0
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.2e-37 161.8 390 34.1
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.4e-36 159.1 611 28.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.8e-36 158.7 462 29.0
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 3.1e-36 157.9 562 29.7
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 5.9e-35 153.7 621 26.4
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.3e-34 152.5 389 32.6
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.1e-33 149.4 375 36.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.5e-33 149.1 247 40.1
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 4.2e-33 147.5 385 33.2
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.0e-31 141.4 231 37.2
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.0e-30 138.7 240 37.9
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.7e-29 135.6 220 38.6
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.8e-29 134.0 345 33.6
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 8.3e-29 133.3 356 35.7
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.4e-28 132.5 390 31.8
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.4e-28 130.6 461 30.2
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.2e-27 129.4 197 42.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.9e-26 124.8 385 31.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.5e-25 121.7 245 35.5
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 3.6e-24 117.9 231 37.7
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-22 112.5 382 30.1
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-22 112.5 382 30.1
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-22 112.1 361 30.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 3.4e-22 111.3 501 28.1
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 3.4e-22 111.3 501 28.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 5.7e-22 110.5 379 30.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.7e-21 109.0 328 32.0
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-21 108.6 332 30.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-21 108.6 382 29.3
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.9e-21 107.5 485 26.8
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.9e-21 107.5 485 26.8
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.9e-21 107.5 485 26.8
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 5.4e-20 104.0 108 48.1
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.3e-18 98.6 187 38.5
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 8.6e-18 96.7 391 27.1
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.5e-17 94.0 221 32.1
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 5.5e-17 94.0 213 36.6
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.7e-16 90.9 85 54.1
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 6.1e-16 90.5 286 27.3
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 1.8e-15 89.0 576 22.4
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.3e-13 80.5 218 29.4
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.1e-12 79.7 788 21.4
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.8e-12 79.0 374 25.1
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 5.4e-12 77.4 319 28.8
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 5.4e-12 77.4 319 28.8
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.2e-11 76.3 375 25.1
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 1.6e-11 75.9 176 33.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 4.6e-11 74.3 77 51.9
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.7e-10 72.4 195 30.8
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 4.3e-09 67.8 87 39.1
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-08 65.9 183 31.7
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.6e-08 65.9 76 43.4
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 6.2e-08 63.9 172 30.8
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 8.9e-07 60.1 109 36.7


User provided reference genes

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