Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0744 Trochodendron aralioides HOM05D002872 ORTHO05D003204 4.2e-41 171.0 91 100.0
TAR636G3536 Trochodendron aralioides HOM05D002872 ORTHO05D003204 3.3e-38 161.4 91 94.5
TAR629G2377 Trochodendron aralioides HOM05D000372 ORTHO05D000948 1.7e-34 149.1 81 97.5
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 4.3e-22 107.8 69 84.1
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 6.3e-21 104.0 69 79.7
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 1.5e-19 99.4 70 74.3
Cpa.g.sc119.19 Carica papaya HOM05D002872 ORTHO05D003204 7.6e-19 97.1 91 58.2
TAR362G1271 Trochodendron aralioides HOM05D002872 ORTHO05D414815 7.6e-19 97.1 78 71.8
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 1.3e-18 96.3 91 59.3
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.3e-18 96.3 70 68.6
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 1.7e-18 95.9 91 59.3
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 3.8e-18 94.7 69 71.0
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 3.8e-18 94.7 90 57.8
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 3.8e-18 94.7 69 69.6
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 5.0e-18 94.4 91 54.9
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 6.5e-18 94.0 69 68.1
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 1.1e-17 93.2 70 67.1
Gohir.D13G214900 Gossypium hirsutum HOM05D002872 ORTHO05D003204 1.1e-17 93.2 70 67.1
Gorai.013G245200 Gossypium raimondii HOM05D002872 ORTHO05D003204 1.1e-17 93.2 70 67.1
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.1e-17 93.2 69 66.7
Nitab4.5_0000075g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.4e-17 92.8 69 66.7
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 1.4e-17 92.8 69 68.1
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 1.4e-17 92.8 69 68.1
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 1.9e-17 92.4 70 62.9
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.9e-17 92.4 69 71.0
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.9e-17 92.4 69 71.0
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 3.2e-17 91.7 70 64.3
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 3.2e-17 91.7 91 54.9
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 3.2e-17 91.7 69 66.7
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 4.2e-17 91.3 69 69.6
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 4.2e-17 91.3 91 54.9
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 5.5e-17 90.9 70 62.9
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 9.3e-17 90.1 69 68.1
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 1.2e-16 89.7 70 62.9
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 2.1e-16 89.0 70 61.4
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 2.1e-16 89.0 91 52.7
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 2.7e-16 88.6 70 61.4
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 2.7e-16 88.6 70 61.4
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 2.7e-16 88.6 69 63.8
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 4.6e-16 87.8 69 65.2
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 4.6e-16 87.8 70 61.4
TAR645G0001 Trochodendron aralioides HOM05D001120 ORTHO05D002447 4.6e-16 87.8 53 83.0
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 6.1e-16 87.4 91 52.7
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 7.9e-16 87.0 70 60.0
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 7.9e-16 87.0 70 60.0
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 7.9e-16 87.0 70 65.7
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 1.4e-15 86.3 69 60.9
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 1.4e-15 86.3 70 64.3
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 1.4e-15 86.3 69 60.9
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 60.0
C07p54870 Brassica napus HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 60.0
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 58.6
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 60.0
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 60.0
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 1.8e-15 85.9 70 62.9
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 3.0e-15 85.1 70 60.0
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 3.0e-15 85.1 69 63.8
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 3.0e-15 85.1 70 58.6
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 3.0e-15 85.1 69 63.8
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 5.1e-15 84.3 70 64.3
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 6.7e-15 84.0 69 65.2
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 8.8e-15 83.6 70 58.6
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 1.1e-14 83.2 70 61.4
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 1.1e-14 83.2 70 62.9
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 1.5e-14 82.8 69 63.8
Hund20608 Selenicereus undatus HOM05D002872 ORTHO05D003204 1.5e-14 82.8 69 60.9
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 1.9e-14 82.4 69 63.8
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 1.9e-14 82.4 69 62.3
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 1.9e-14 82.4 69 59.4
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 2.5e-14 82.0 70 62.9
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 3.3e-14 81.6 70 61.4
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 3.3e-14 81.6 69 55.1
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 3.3e-14 81.6 69 58.0
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 4.3e-14 81.3 69 60.9
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 1.3e-13 79.7 69 55.1
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 1.7e-13 79.3 69 62.3
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 2.8e-13 78.6 69 60.9
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 3.7e-13 78.2 77 58.4
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 1.4e-12 76.3 69 55.1
HPP92_014370 Vanilla planifolia HOM05D002872 ORTHO05D003204 1.8e-12 75.9 69 59.4
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 2.4e-12 75.5 67 56.7
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 3.1e-12 75.1 69 56.5
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 5.3e-12 74.3 69 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2790 Anthoceros agrestis HOM05D002872 ORTHO05D003204 6.9e-12 73.9 70 58.6
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 2.0e-11 72.4 71 56.3
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 3.4e-11 71.6 65 56.9
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 7.7e-11 70.5 84 51.2
Pp3c20_17010 Physcomitrium patens HOM05D002872 ORTHO05D003204 1.0e-10 70.1 70 51.4
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 3.8e-10 68.2 49 67.3
Mapoly0004s0186 Marchantia polymorpha HOM05D002872 ORTHO05D003204 5.0e-10 67.8 71 54.9
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 1.1e-09 66.6 93 44.1
Zm00001eb015470 Zea mays HOM05D002872 ORTHO05D003204 1.4e-09 66.2 70 54.3
Pp3c23_11620 Physcomitrium patens HOM05D002872 ORTHO05D003204 1.2e-08 63.2 70 44.3
Os03g0324800 Oryza sativa ssp. japonica HOM05D002872 ORTHO05D003204 3.6e-08 61.6 70 50.0
SHI06882 Sapria himalayana HOM05D002872 ORTHO05D003204 7.9e-08 60.5 49 67.3
TWI59G0864 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 1.4e-07 59.7 69 43.5
MSTRG.4917 Avicennia marina HOM05D002872 ORTHO05D003204 2.6e-06 55.5 69 40.6
Dinv44110 Davidia involucrata HOM05D002872 ORTHO05D003204 2.6e-06 55.5 69 44.9
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 2.6e-06 55.5 86 44.2
THA.LOC104802474 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 2.6e-06 55.5 69 43.5
Thecc.01G385700 Theobroma cacao HOM05D002872 ORTHO05D003204 2.6e-06 55.5 71 42.3
Thhalv10001582m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 4.4e-06 54.7 69 42.0
Aa31LG1G26640 Aethionema arabicum HOM05D002872 ORTHO05D003204 5.7e-06 54.3 69 42.0
COL.COLO4_12468 Corchorus olitorius HOM05D002872 ORTHO05D003204 5.7e-06 54.3 69 40.6
Gohir.A07G147400 Gossypium hirsutum HOM05D002872 ORTHO05D003204 5.7e-06 54.3 69 42.0
Potri.002G142900 Populus trichocarpa HOM05D002872 ORTHO05D003204 5.7e-06 54.3 69 43.5
Prupe.2G135800 Prunus persica HOM05D002872 ORTHO05D003204 5.7e-06 54.3 70 41.4
BcaB01g03298 Brassica carinata HOM05D002872 ORTHO05D003204 7.4e-06 53.9 69 40.6
BcaC02g07132 Brassica carinata HOM05D002872 ORTHO05D003204 7.4e-06 53.9 69 42.0
C04p71380 Brassica napus HOM05D002872 ORTHO05D003204 7.4e-06 53.9 69 42.0
BolC4t28644H Brassica oleracea HOM05D002872 ORTHO05D003204 7.4e-06 53.9 69 42.0
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 7.4e-06 53.9 47 57.4
Sp4g27120 Schrenkiella parvula HOM05D002872 ORTHO05D003204 7.4e-06 53.9 69 42.0
AL4G44150 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 42.0
A04p33620 Brassica napus HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 42.0
BraA04t18825Z Brassica rapa HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 42.0
CARHR140310 Cardamine hirsuta HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 42.0
Migut.N01761 Erythranthe guttata HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 40.6
Lj7C539G2 Lonicera japonica HOM05D002872 ORTHO05D003204 9.7e-06 53.5 69 40.6
MD07G1087600 Malus domestica HOM05D002872 ORTHO05D003204 9.7e-06 53.5 70 41.4
GSVIVG01018179001 Vitis vinifera HOM05D002872 ORTHO05D003204 9.7e-06 53.5 96 37.5


User provided reference genes

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