Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 8.9e-50 202.6 104 100.0
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 6.7e-29 133.3 104 71.2
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.8e-21 108.6 68 75.0
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 2.1e-19 101.7 68 69.1
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 2.1e-19 101.7 102 58.8
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 6.3e-19 100.1 68 70.6
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 8.2e-19 99.8 67 70.1
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.4e-18 99.0 68 66.2
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 1.8e-18 98.6 67 70.1
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 1.8e-18 98.6 68 67.6
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 1.8e-18 98.6 68 66.2
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 2.4e-18 98.2 101 52.5
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 3.1e-18 97.8 68 66.2
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 5.3e-18 97.1 68 66.2
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 5.3e-18 97.1 68 66.2
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 9.0e-18 96.3 102 52.0
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 1.2e-17 95.9 67 65.7
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.2e-17 95.9 67 67.2
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 1.2e-17 95.9 68 64.7
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 1.5e-17 95.5 68 64.7
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.0e-17 95.1 68 66.2
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 2.6e-17 94.7 68 61.8
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 3.4e-17 94.4 68 63.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 4.5e-17 94.0 68 64.7
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 5.9e-17 93.6 67 65.7
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 1.0e-16 92.8 68 63.2
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.0e-16 92.8 72 63.9
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.3e-16 92.4 68 61.8
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 2.2e-16 91.7 68 63.2
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 2.9e-16 91.3 73 61.6
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 2.9e-16 91.3 67 64.2
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 5.0e-16 90.5 68 60.3
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 6.5e-16 90.1 67 67.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 6.5e-16 90.1 72 61.1
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 8.5e-16 89.7 68 61.8
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.1e-15 89.4 73 61.6
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.4e-15 89.0 68 60.3
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.4e-15 89.0 68 64.7
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 1.9e-15 88.6 68 60.3
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.9e-15 88.6 82 56.1
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 1.9e-15 88.6 67 61.2
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 3.2e-15 87.8 85 55.3
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 4.2e-15 87.4 68 60.3
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 5.5e-15 87.0 104 47.1
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.2e-15 86.7 71 59.2
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 7.2e-15 86.7 74 58.1
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 1.2e-14 85.9 67 61.2
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 2.7e-14 84.7 68 55.9
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 4.6e-14 84.0 70 57.1
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 6.1e-14 83.6 68 54.4
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 6.1e-14 83.6 68 57.4
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.0e-13 82.8 68 57.4
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.0e-13 82.8 68 54.4
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.0e-13 82.8 68 54.4
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.0e-13 82.8 68 54.4
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 1.0e-13 82.8 68 60.3
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-13 82.4 70 57.1
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-13 82.4 70 57.1
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.3e-13 82.4 103 45.6
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.8e-13 82.0 68 52.9
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 1.8e-13 82.0 98 45.9
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.3e-13 81.6 68 55.9
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.3e-13 81.6 72 55.6
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 3.0e-13 81.3 70 55.7
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 3.0e-13 81.3 67 53.7
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 3.9e-13 80.9 68 54.4
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 3.9e-13 80.9 65 60.0
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 3.9e-13 80.9 85 50.6
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.9e-13 80.9 75 56.0
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.9e-13 80.9 75 56.0
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.1e-13 80.5 70 55.7
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 5.1e-13 80.5 68 55.9
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 8.7e-13 79.7 68 54.4
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 1.5e-12 79.0 68 52.9
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.9e-12 78.6 70 54.3
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 1.9e-12 78.6 85 49.4
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 2.5e-12 78.2 68 52.9
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 2.5e-12 78.2 68 52.9
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 2.5e-12 78.2 74 52.7
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 3.3e-12 77.8 70 54.3
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.3e-12 77.8 70 51.4
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 3.3e-12 77.8 67 52.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.3e-12 77.4 68 52.9
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 4.3e-12 77.4 71 53.5
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.7e-12 77.0 68 52.9
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.7e-12 77.0 68 52.9
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.4e-12 76.6 70 52.9
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 7.4e-12 76.6 67 49.3
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 9.7e-12 76.3 68 52.9
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 9.7e-12 76.3 68 52.9
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.8e-11 74.7 84 50.0
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 8.2e-11 73.2 70 50.0
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.1e-10 70.9 52 61.5
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 9.1e-10 69.7 68 48.5
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 9.1e-10 69.7 68 47.1
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 9.1e-10 69.7 68 47.1
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 9.1e-10 69.7 69 49.3
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.2e-09 69.3 64 53.1
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.5e-09 68.9 52 59.6
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.5e-09 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 2.6e-09 68.2 68 47.1
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 2.6e-09 68.2 68 50.0
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-09 67.0 68 47.1
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 5.9e-09 67.0 66 47.0
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 5.0e-08 63.9 68 45.6
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 5.0e-08 63.9 68 45.6
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 5.0e-08 63.9 68 45.6
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 5.0e-08 63.9 98 39.8
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 6.5e-08 63.5 69 43.5
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 8.5e-08 63.2 102 37.3
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 1.4e-07 62.4 84 41.7
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.4e-07 62.4 68 47.1
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 3.2e-07 61.2 97 38.1
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 7.9e-06 56.6 68 44.1


User provided reference genes

Program Settings