Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 4808.0 2594 100.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2804.2 2514 68.9
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2770.7 2538 65.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2632.8 2559 63.6
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2507.2 2314 65.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2444.5 2570 60.2
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2424.8 2545 60.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 2376.7 2553 58.6
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2370.1 2577 58.3
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2358.9 2555 58.1
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2314.7 2550 58.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2293.5 2558 57.6
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2274.2 2595 56.6
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2253.0 2590 56.2
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2244.2 2540 57.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2225.3 2552 55.3
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2219.9 2553 56.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2196.4 2552 55.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2158.3 2552 55.9
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2127.4 2543 54.7
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2125.5 2550 55.2
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2122.1 2608 54.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2115.9 2553 54.2
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2113.2 2508 55.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2105.9 2612 53.8
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2105.9 2553 54.0
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2105.5 2535 55.3
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2097.0 2611 53.8
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2097.0 2649 53.3
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2096.6 2553 53.7
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2096.2 2566 53.5
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 2091.2 2521 55.1
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2078.9 2554 53.8
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2078.1 2550 54.6
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2075.8 2201 60.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2023.4 2554 52.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2019.2 2548 53.2
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2014.6 2553 52.6
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2010.3 2553 52.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2000.7 2543 52.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1988.4 2566 54.1
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1981.5 2548 52.3
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1967.6 2056 61.3
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1965.7 2569 52.1
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1932.9 2534 52.4
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1911.7 2545 51.3
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1900.9 2542 52.7
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1899.8 2546 51.6
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1898.2 2644 51.0
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1897.5 2536 51.1
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1895.9 2575 51.6
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1895.6 2558 51.4
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1888.2 2546 51.3
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1883.2 2574 51.4
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1875.5 2552 49.7
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1873.2 2564 52.3
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1870.9 2543 50.8
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1865.1 2538 51.3
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1864.0 2645 50.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1863.6 1290 80.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1853.6 2672 48.3
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1847.0 2551 51.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1832.8 2538 51.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1830.8 2546 49.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1829.3 2538 50.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1828.5 2549 50.1
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1808.1 2539 49.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1802.7 2540 50.3
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1793.5 2566 50.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1789.6 2422 50.8
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1756.9 2594 49.2
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1723.8 2615 47.1
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1723.4 2549 48.1
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1716.8 2540 48.7
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1701.4 2538 49.0
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1684.1 2539 47.9
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1677.5 2524 47.7
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1676.0 2532 48.1
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1654.0 2470 46.4
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1653.6 2542 48.0
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1642.5 2541 47.6
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1639.4 2546 46.8
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1633.2 2432 46.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1633.2 1899 55.0
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1627.5 2611 48.2
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1577.8 2565 46.6
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1575.1 2542 46.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1568.1 2543 46.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1459.9 2538 44.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1431.0 2572 44.7
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1391.3 2547 44.1
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1388.2 2535 44.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1330.1 2539 43.1
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1256.9 2543 41.9
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1254.6 981 75.6
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1241.1 2535 41.5
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1218.4 2540 40.7
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1185.2 2487 40.4
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1182.5 2552 40.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1171.8 2487 40.7
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1157.1 1765 47.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1100.5 2461 38.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 4.5e-305 1052.7 2761 38.4
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 8.4e-304 1048.5 2449 38.8
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.7e-296 1024.2 2550 38.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.8e-293 1014.2 1719 45.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-290 1005.0 984 61.6
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 5.5e-255 886.3 1077 53.9
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.1e-242 843.6 2594 35.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.4e-242 843.2 736 66.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.3e-237 827.8 1042 54.1
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.2e-220 772.3 2482 35.1
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.9e-216 757.3 1960 38.1
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 7.8e-209 733.0 2478 34.5
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.1e-207 729.2 2478 34.5
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.5e-207 728.8 1836 35.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.3e-203 715.7 2474 34.6
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.3e-203 715.7 2474 34.6
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.7e-201 708.0 959 52.2
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.7e-201 708.0 2510 34.2
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.5e-178 630.6 588 65.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 7.2e-146 523.9 474 61.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.8e-142 511.1 791 46.4
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.0e-140 505.8 516 59.1
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-129 469.9 954 38.7
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 4.6e-124 451.4 1460 35.3
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.5e-122 446.4 1253 34.8
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 7.5e-119 434.1 687 48.9
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 7.5e-119 434.1 1832 32.1
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.5e-114 419.1 2965 29.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-97 363.6 2829 29.5
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.4e-93 348.2 1046 38.0
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 7.1e-85 321.2 983 33.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-79 303.9 313 53.7
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 6.7e-75 288.1 2811 27.6
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.1e-67 261.9 2812 27.4
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.7e-59 235.0 2432 26.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-54 220.3 581 34.6
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-53 217.6 238 55.9
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 5.5e-53 215.3 258 54.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.7e-52 213.0 583 34.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.6e-52 212.2 258 54.3
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.4e-50 205.7 502 38.6
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.5e-42 180.6 461 35.6
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 5.3e-40 172.2 329 40.4
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.2e-37 162.9 226 48.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.3e-35 156.8 163 58.3
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-31 144.4 329 37.4
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.2e-28 134.4 251 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.4e-27 131.0 2166 25.1
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.5e-21 110.2 304 32.2
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-17 97.8 164 43.9
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.7e-17 96.3 210 40.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 5.4e-16 92.4 71 67.6
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 5.4e-16 92.4 71 67.6
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.3e-14 87.8 158 42.4
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.2e-10 74.7 125 43.2
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.5e-10 74.3 75 61.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.4e-10 73.2 96 50.0
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 5.4e-08 65.9 85 48.2
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.0e-06 61.6 223 28.3
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 5.0e-06 59.3 92 44.6


User provided reference genes

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