Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 4.1e-133 478.0 233 100.0
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.2e-60 237.3 221 55.7
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 4.3e-58 228.8 200 56.5
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 5.6e-58 228.4 217 53.5
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 3.7e-57 225.7 231 52.4
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.8e-56 223.4 191 59.2
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.6e-55 219.5 221 52.0
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 8.4e-54 214.5 206 51.5
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.1e-53 214.2 220 49.5
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 7.1e-53 211.5 230 50.0
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 1.6e-52 210.3 218 50.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.5e-52 209.1 212 50.9
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 4.6e-52 208.8 230 50.0
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 4.6e-52 208.8 217 48.4
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.3e-51 207.2 228 46.9
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 3.9e-51 205.7 227 48.9
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.7e-51 204.9 163 57.1
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 6.2e-49 198.4 223 48.4
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 6.2e-49 198.4 214 49.1
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 8.2e-49 198.0 163 57.1
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 8.2e-49 198.0 223 48.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.8e-48 196.8 217 51.2
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 2.0e-47 193.4 223 46.6
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 4.5e-47 192.2 223 46.2
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.1e-45 187.6 212 45.8
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.4e-45 187.2 222 45.5
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.2e-45 185.7 184 47.3
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 4.2e-45 185.7 191 49.2
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 5.5e-45 185.3 203 50.2
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 9.3e-45 184.5 223 45.3
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.2e-44 184.1 225 42.7
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 2.7e-44 183.0 202 43.1
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 2.7e-44 183.0 220 45.0
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 3.5e-44 182.6 160 51.9
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 3.5e-44 182.6 232 42.7
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 7.9e-44 181.4 182 50.0
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 7.9e-44 181.4 214 44.9
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 1.0e-43 181.0 161 52.2
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 1.3e-43 180.6 177 53.7
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 2.3e-43 179.9 181 48.6
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 2.3e-43 179.9 219 44.3
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 6.7e-43 178.3 166 52.4
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 1.1e-42 177.6 168 48.2
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.1e-42 177.6 182 48.9
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.5e-42 177.2 182 50.0
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 1.9e-42 176.8 219 45.7
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 4.3e-42 175.6 207 49.3
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 9.7e-42 174.5 213 44.6
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.6e-41 173.7 208 44.2
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.6e-41 173.7 150 54.0
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 2.8e-41 172.9 168 48.2
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 3.7e-41 172.6 208 44.2
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 4.8e-41 172.2 161 52.8
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.8e-40 170.2 161 49.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 6.9e-40 168.3 160 50.0
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 1.5e-39 167.2 183 48.6
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.4e-39 166.0 182 48.4
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.7e-38 163.7 161 48.4
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 7.2e-37 158.3 218 39.9
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.2e-36 157.5 182 45.6
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 6.7e-35 151.8 225 36.4
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 4.8e-33 145.6 160 44.4
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 7.7e-31 138.3 156 47.4
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 2.9e-30 136.3 134 48.5
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 3.3e-26 122.9 152 40.8
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 3.7e-25 119.4 104 54.8
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 8.2e-25 118.2 140 42.1
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 2.4e-24 116.7 103 48.5
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.0e-22 111.3 196 33.7
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.0e-22 111.3 196 33.7
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 2.2e-22 110.2 117 44.4
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.0e-22 109.0 196 33.7
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.1e-21 107.8 194 29.4
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 4.2e-21 105.9 188 29.8
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 7.2e-21 105.1 187 32.6
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 7.2e-21 105.1 157 34.4
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.2e-20 104.4 186 29.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.2e-20 104.4 177 33.9
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 2.1e-20 103.6 134 38.1
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 2.1e-20 103.6 192 31.2
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.7e-20 103.2 152 34.9
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.7e-20 103.2 162 32.7
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 4.7e-20 102.4 164 31.7
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 8.0e-20 101.7 134 35.1
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.0e-19 101.3 160 32.5
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.0e-19 101.3 191 29.3
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.4e-19 100.9 152 33.6
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.4e-19 100.9 165 31.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.8e-19 100.5 162 32.1
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.8e-19 100.5 165 30.3
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.8e-19 100.5 152 32.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.9e-19 99.4 157 35.7
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 5.2e-19 99.0 173 31.2
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 5.2e-19 99.0 165 30.9
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 8.8e-19 98.2 164 31.1
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 8.8e-19 98.2 189 29.6
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 8.8e-19 98.2 154 31.2
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 8.8e-19 98.2 194 29.9
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.1e-18 97.8 172 30.2
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.5e-18 97.4 177 30.5
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 2.0e-18 97.1 134 35.8
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.0e-18 97.1 161 32.3
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.0e-18 97.1 161 32.3
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 2.0e-18 97.1 161 37.3
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.0e-18 97.1 189 30.2
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.6e-18 96.7 173 31.2
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 2.6e-18 96.7 183 29.5
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 3.3e-18 96.3 196 28.6
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 3.3e-18 96.3 173 31.2
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 4.4e-18 95.9 157 33.8
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 4.4e-18 95.9 134 35.8
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 4.4e-18 95.9 167 30.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.7e-18 95.5 202 29.2
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 5.7e-18 95.5 162 30.9
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.7e-18 95.5 162 30.9
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 7.4e-18 95.1 165 32.7
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 9.7e-18 94.7 193 28.0
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.7e-18 94.7 171 29.2
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 9.7e-18 94.7 174 27.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 9.7e-18 94.7 163 29.4
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 9.7e-18 94.7 169 30.2
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.3e-17 94.4 188 26.6
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.2e-17 93.6 184 29.9
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.8e-17 93.2 186 28.0
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.8e-17 93.2 165 31.5
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 3.7e-17 92.8 164 30.5
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 4.8e-17 92.4 110 45.5
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 8.2e-17 91.7 150 31.3
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.1e-16 91.3 158 31.0
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.8e-16 90.5 194 24.7
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.8e-16 90.5 162 29.6
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.8e-16 90.5 164 28.7
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 4.1e-16 89.4 187 28.3
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 7.0e-16 88.6 149 28.9
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 7.0e-16 88.6 164 26.8
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 9.1e-16 88.2 128 32.0
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 9.1e-16 88.2 128 32.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.6e-15 87.4 128 31.2
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.6e-15 87.4 128 31.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.6e-15 87.4 167 29.9
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.6e-15 87.4 173 28.9
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 3.5e-15 86.3 173 28.9
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 7.7e-15 85.1 172 25.6
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 7.7e-15 85.1 164 25.6
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 7.7e-15 85.1 164 28.0
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 7.7e-15 85.1 170 29.4
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.7e-15 85.1 167 28.7
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.3e-14 84.3 167 28.7
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.3e-14 84.3 140 32.1
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.7e-14 84.0 170 28.8
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.7e-14 84.0 128 30.5
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 2.2e-14 83.6 161 29.2
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.8e-14 82.8 167 28.7
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.8e-14 82.8 167 28.7
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.0e-14 82.4 155 29.0
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 6.5e-14 82.0 167 28.7
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 8.5e-14 81.6 151 27.2
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.2e-13 79.7 134 29.9
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 7.2e-13 78.6 149 28.9
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 9.4e-13 78.2 138 29.7
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 6.1e-12 75.5 80 47.5
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.3e-11 73.6 141 29.8
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.4e-08 64.3 109 30.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 9.1e-08 61.6 131 29.0
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 2.7e-07 60.1 103 32.0
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 4.5e-07 59.3 126 27.8


User provided reference genes

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