Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.6e-124 447.6 219 100.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 3.9e-109 398.3 219 89.5
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 7.8e-102 374.0 220 83.2
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.3e-101 373.2 220 82.7
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.9e-101 371.7 219 83.6
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.1e-101 371.3 219 83.1
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 6.6e-101 370.9 219 83.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 8.6e-101 370.5 219 84.0
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.5e-100 369.8 219 81.7
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.5e-100 369.8 220 81.8
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.9e-100 369.4 220 81.8
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.9e-100 369.4 220 82.3
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.3e-100 368.6 220 82.7
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 3.3e-100 368.6 220 82.7
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.3e-100 368.2 219 81.7
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 5.6e-100 367.9 220 80.9
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 5.6e-100 367.9 219 79.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.2e-99 366.7 219 81.7
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.6e-99 365.2 220 80.9
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.6e-99 365.2 221 81.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.6e-99 365.2 221 81.0
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 82.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.7e-99 364.8 221 80.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 8.1e-99 364.0 220 80.9
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.4e-98 363.2 219 80.8
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.4e-98 363.2 220 81.8
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.8e-98 362.8 221 80.5
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.8e-98 362.8 220 80.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.3e-98 362.5 220 80.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.1e-98 362.1 220 80.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.0e-98 361.7 219 80.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 79.9
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 79.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 78.5
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.0e-97 359.4 222 80.2
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 3.4e-97 358.6 220 80.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.8e-97 357.8 219 78.5
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 7.6e-97 357.5 219 80.4
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 7.6e-97 357.5 220 78.2
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.6e-97 357.5 219 81.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.3e-96 356.7 220 80.9
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.7e-96 356.3 220 81.4
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.9e-96 355.5 220 80.0
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 80.5
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.9e-96 354.8 219 78.5
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 4.9e-96 354.8 219 79.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 8.4e-96 354.0 219 78.1
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.1e-95 353.6 219 79.0
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.4e-95 351.3 238 76.5
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 9.2e-95 350.5 221 77.4
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 77.4
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.1e-94 349.4 193 88.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.7e-94 349.0 221 76.9
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.5e-92 343.2 219 76.7
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.6e-92 341.3 219 75.3
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.3e-92 340.9 219 78.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.2e-91 340.1 221 76.9
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.4e-90 336.7 228 73.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.4e-90 336.7 219 76.3
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-90 336.7 220 75.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.4e-90 335.9 220 75.5
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 4.0e-90 335.1 220 75.9
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 6.8e-90 334.3 219 74.4
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.8e-90 334.3 219 75.8
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 6.8e-90 334.3 219 75.8
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 8.9e-90 334.0 220 75.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.2e-89 333.6 220 75.5
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.6e-89 332.4 220 75.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.6e-89 330.9 196 83.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 6.4e-88 327.8 199 80.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 6.4e-88 327.8 219 72.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.1e-87 327.0 219 74.9
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.4e-87 326.6 196 81.6
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.4e-87 325.9 220 73.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 3.2e-87 325.5 220 72.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.1e-87 324.3 299 58.9
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 9.3e-87 323.9 194 80.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.1e-86 322.8 197 81.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 4.6e-86 321.6 232 69.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.7e-85 319.7 219 71.2
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-85 319.3 221 72.4
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.5e-84 316.6 194 79.9
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.9e-84 316.2 194 79.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.6e-83 313.2 193 78.2
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.6e-83 312.0 221 72.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.6e-83 312.0 221 72.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.1e-82 310.5 212 73.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.8e-82 309.7 194 78.4
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.2e-81 307.0 210 72.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.5e-81 306.6 198 77.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.0e-81 306.2 221 71.0
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.0e-81 306.2 221 71.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.0e-81 306.2 194 77.8
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 4.5e-81 305.1 221 71.0
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 4.5e-81 305.1 221 71.0
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 4.5e-81 305.1 221 69.7
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.5e-81 305.1 183 82.5
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.8e-81 304.7 222 70.3
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 5.8e-81 304.7 221 70.1
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.8e-81 304.7 222 70.3
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.8e-81 304.7 195 77.4
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 9.9e-81 303.9 288 57.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.2e-80 302.8 221 70.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 6.4e-80 301.2 222 68.9
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.9e-79 299.7 223 68.6
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 5.4e-79 298.1 196 77.0
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.1e-79 297.7 203 71.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-77 293.5 194 75.8
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.1e-75 286.2 221 68.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 6.2e-75 284.6 210 70.0
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.4e-74 283.5 219 62.6
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 5.3e-74 281.6 192 72.4
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 5.8e-73 278.1 212 64.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.9e-72 275.8 171 77.8
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.9e-71 273.1 168 77.4
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.9e-71 273.1 212 64.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 5.5e-71 271.6 178 75.8
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 5.1e-69 265.0 221 59.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.1e-68 263.8 161 81.4
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.6e-68 261.5 219 59.4
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 7.4e-68 261.2 223 61.0
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 7.4e-68 261.2 223 61.0
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.1e-66 255.8 218 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.3e-66 255.0 195 64.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 7.6e-65 251.1 158 79.7
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.5e-63 245.0 222 55.9
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.7e-62 242.7 221 55.2
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 4.6e-62 241.9 219 57.1
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.6e-60 234.2 168 71.4
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.7e-59 232.3 195 64.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.4e-58 229.6 193 58.5
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.2e-51 206.5 183 60.7
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 5.3e-50 201.8 219 49.3
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.5e-49 198.7 160 62.5
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 5.0e-48 195.3 175 57.7
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.0e-40 171.0 93 83.9
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 5.2e-37 158.7 221 38.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.8e-35 152.9 100 77.0
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.7e-35 152.5 228 37.7
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.1e-34 149.1 248 41.5
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-30 137.5 84 79.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 4.7e-30 135.6 218 36.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.2e-27 126.7 84 67.9
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-26 124.0 140 47.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.3e-19 100.9 84 66.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.8e-19 99.0 93 54.8
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.3e-13 80.1 142 40.1
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 2.8e-11 73.2 208 25.5
CAN.G39.28 Capsicum annuum HOM05D001081 ORTHO05D024763 1.6e-06 57.4 51 56.9
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 4.7e-06 55.8 43 60.5


User provided reference genes

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