Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 6.1e-118 427.6 224 100.0
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 5.0e-72 275.0 234 65.4
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 5.3e-45 185.3 242 52.5
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 5.8e-44 181.8 237 51.1
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 5.8e-44 181.8 241 51.5
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 9.9e-44 181.0 253 44.7
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 1.4e-42 177.2 252 45.6
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.2e-41 174.1 248 48.4
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.1e-41 173.3 257 44.7
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 3.5e-41 172.6 240 46.7
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 5.1e-40 168.7 239 51.9
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.5e-39 166.4 239 51.5
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 7.4e-39 164.9 251 47.0
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 2.8e-38 162.9 227 48.5
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 6.2e-38 161.8 241 45.6
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 6.2e-38 161.8 260 43.8
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 8.1e-38 161.4 256 43.8
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 8.1e-38 161.4 262 45.4
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 3.1e-37 159.5 282 45.7
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 4.0e-37 159.1 262 44.3
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 6.9e-37 158.3 234 44.0
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 2.0e-36 156.8 161 59.0
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.4e-36 156.0 256 42.6
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 9.9e-36 154.5 225 48.0
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.3e-35 154.1 266 41.0
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 6.4e-35 151.8 232 45.7
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.4e-34 150.6 223 47.5
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 3.2e-34 149.4 271 40.6
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 9.3e-34 147.9 235 40.9
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 2.7e-33 146.4 241 44.4
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 3.5e-33 146.0 261 42.1
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 6.0e-33 145.2 147 59.2
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 8.7e-32 141.4 251 42.2
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.3e-30 137.5 224 45.5
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 2.8e-30 136.3 255 41.2
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 6.2e-30 135.2 226 46.0
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.8e-29 133.7 207 45.9
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.0e-27 127.9 189 46.6
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.0e-27 127.9 225 44.0
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 1.3e-27 127.5 260 41.9
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 2.2e-27 126.7 188 44.7
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.2e-27 126.7 162 47.5
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 4.9e-27 125.6 212 45.8
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.9e-26 123.6 198 45.5
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 5.5e-26 122.1 250 38.8
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.2e-25 120.9 235 42.1
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.0e-24 117.9 210 41.0
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-23 114.0 248 37.9
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.5e-23 114.0 248 37.9
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.5e-23 113.2 231 38.1
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 7.4e-23 111.7 199 44.7
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.3e-22 110.9 231 37.7
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.6e-22 110.5 231 39.0
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 2.1e-22 110.2 278 36.7
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 3.7e-22 109.4 269 37.2
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.4e-21 107.5 238 41.2
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 4.1e-21 105.9 267 37.1
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 1.5e-20 104.0 205 39.5
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.4e-20 102.8 223 36.8
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 4.5e-20 102.4 233 39.9
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 1.3e-19 100.9 234 35.0
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 3.8e-19 99.4 275 38.9
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 6.5e-19 98.6 239 35.1
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 6.5e-19 98.6 221 37.6
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 4.2e-18 95.9 251 36.3
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 1.6e-17 94.0 235 36.2
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 4.6e-17 92.4 230 35.2
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 4.6e-17 92.4 239 35.6
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 6.1e-17 92.0 221 36.7
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 7.9e-17 91.7 232 37.1
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 1.3e-16 90.9 164 40.9
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 8.7e-16 88.2 160 42.5
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 1.1e-15 87.8 119 48.7
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.5e-15 87.4 178 38.8
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.3e-14 84.3 201 37.3
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 4.8e-14 82.4 121 45.5
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 2.0e-12 77.0 234 35.0
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 1.0e-11 74.7 232 33.2
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 2.9e-11 73.2 232 32.8
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 1.4e-10 70.9 230 31.7
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 3.2e-10 69.7 152 36.8
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 4.2e-10 69.3 232 28.0
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 5.5e-10 68.9 227 31.3
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 5.5e-10 68.9 227 31.3
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 5.5e-10 68.9 227 31.3
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 5.5e-10 68.9 230 36.1
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 9.4e-10 68.2 209 33.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 9.4e-10 68.2 100 43.0
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 1.2e-09 67.8 226 29.6
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 1.2e-09 67.8 218 32.6
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 1.6e-09 67.4 230 34.8
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.1e-09 67.0 210 37.1
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 2.1e-09 67.0 218 31.7
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 3.6e-09 66.2 230 30.9
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.6e-09 66.2 105 41.0
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 6.1e-09 65.5 229 29.7
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 6.1e-09 65.5 219 31.5
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 7.9e-09 65.1 48 62.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.0e-08 64.7 91 42.9
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.0e-08 64.7 109 38.5
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 1.4e-08 64.3 48 58.3
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 1.4e-08 64.3 149 35.6
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 1.8e-08 63.9 177 31.6
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.8e-08 63.9 90 40.0
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.8e-08 63.9 90 40.0
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 3.0e-08 63.2 207 30.4
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.0e-08 63.2 108 38.9
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 3.9e-08 62.8 105 41.9
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.1e-08 62.4 97 43.3
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.5e-07 60.8 95 40.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.0e-07 60.5 90 43.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-07 60.5 124 35.5
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 2.0e-07 60.5 228 30.7
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 2.6e-07 60.1 107 38.3
C07p23380 Brassica napus HOM05D009961 ORTHO05D008483 3.3e-07 59.7 214 31.3
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 3.3e-07 59.7 110 38.2
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.3e-07 59.7 110 39.1
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.4e-07 59.3 110 37.3
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 5.7e-07 58.9 113 36.3
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 5.7e-07 58.9 127 33.1
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 7.4e-07 58.5 93 38.7
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 7.4e-07 58.5 93 38.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 7.4e-07 58.5 88 39.8
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.4e-07 58.5 107 38.3
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.4e-07 58.5 165 30.9
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 7.4e-07 58.5 161 31.7
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.3e-06 57.8 110 39.1
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.3e-06 57.8 110 39.1
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.3e-06 57.8 97 37.1
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.2e-06 57.0 110 36.4
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.7e-06 56.2 108 37.0
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.8e-06 55.8 110 36.4
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 4.8e-06 55.8 109 35.8
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 4.8e-06 55.8 109 40.4
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 4.8e-06 55.8 179 30.2
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 6.3e-06 55.5 223 30.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.3e-06 55.5 111 36.0
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 6.3e-06 55.5 82 43.9
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.2e-06 55.1 108 37.0
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.2e-06 55.1 108 37.0


User provided reference genes

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