Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 3.2e-154 548.9 393 100.0
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.3e-75 287.7 405 64.7
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.3e-46 191.4 404 56.9
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.3e-42 176.4 227 83.7
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 3.6e-41 173.3 359 66.0
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 8.1e-41 172.2 241 80.5
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 8.1e-41 172.2 399 55.4
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 8.1e-41 172.2 236 77.1
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.1e-40 170.2 388 58.0
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 8.9e-40 168.7 235 79.1
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 8.9e-40 168.7 337 62.9
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.5e-39 167.9 407 42.8
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.0e-39 167.5 349 60.2
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 2.0e-39 167.5 355 58.3
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 2.6e-39 167.2 336 62.5
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 5.8e-39 166.0 233 79.4
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 7.6e-39 165.6 227 80.6
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 7.6e-39 165.6 330 60.6
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.3e-38 164.9 405 53.6
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.3e-38 164.9 231 80.1
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.7e-38 164.5 330 60.3
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 2.9e-38 163.7 397 55.4
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 2.9e-38 163.7 404 42.3
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.8e-38 163.3 357 56.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.8e-38 163.3 342 60.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.9e-38 162.9 341 59.8
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 4.9e-38 162.9 345 61.7
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 6.4e-38 162.5 371 57.7
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.1e-37 161.8 366 56.0
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.1e-37 161.8 335 60.3
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 2.4e-37 160.6 330 63.3
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 2.4e-37 160.6 372 54.6
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 3.2e-37 160.2 231 60.2
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 3.2e-37 160.2 335 62.4
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 4.1e-37 159.8 229 74.7
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 4.1e-37 159.8 235 75.3
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 5.4e-37 159.5 238 74.8
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 9.2e-37 158.7 238 76.5
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.2e-36 158.3 233 76.8
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 1.2e-36 158.3 390 53.6
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.6e-36 157.9 329 60.5
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.1e-36 157.5 339 58.4
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 3.5e-36 156.8 407 44.5
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 4.6e-36 156.4 354 57.9
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 6.0e-36 156.0 414 51.4
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.0e-36 156.0 168 55.4
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.0e-35 155.2 339 59.0
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.3e-35 154.8 235 74.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.7e-35 154.5 229 78.2
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 5.1e-35 152.9 237 75.9
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.1e-35 152.9 218 83.9
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 6.6e-35 152.5 344 57.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 6.6e-35 152.5 333 58.3
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 8.7e-35 152.1 361 55.4
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.9e-34 151.0 235 77.9
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.9e-34 151.0 229 75.1
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 4.3e-34 149.8 243 70.4
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 9.6e-34 148.7 245 72.7
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.2e-33 148.3 216 77.8
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.2e-33 148.3 335 57.9
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 6.2e-33 146.0 337 59.3
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 8.1e-33 145.6 234 66.7
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 8.1e-33 145.6 227 68.7
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.1e-32 145.2 226 77.9
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.4e-32 144.1 374 51.1
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.4e-32 144.1 332 58.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 3.1e-32 143.7 239 67.4
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 5.2e-32 142.9 313 56.5
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 6.9e-32 142.5 229 76.9
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 9.0e-32 142.1 235 71.9
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 2.0e-31 141.0 331 53.5
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.6e-31 140.6 233 72.1
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 2.6e-31 140.6 231 73.2
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.4e-31 140.2 197 80.7
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 3.4e-31 140.2 351 53.8
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 7.6e-31 139.0 384 54.4
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.3e-30 138.3 329 54.7
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.2e-30 137.5 240 66.2
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.9e-30 137.1 230 73.9
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 3.8e-30 136.7 405 49.1
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 3.8e-30 136.7 187 86.6
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.9e-30 136.3 239 70.3
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.9e-30 136.3 276 66.3
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 6.4e-30 136.0 332 53.3
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 8.4e-30 135.6 243 70.4
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 8.4e-30 135.6 99 69.7
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.4e-29 134.8 250 70.4
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 1.9e-29 134.4 235 66.0
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 4.2e-29 133.3 231 72.3
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 9.3e-29 132.1 236 69.9
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.6e-28 131.3 332 53.6
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 3.5e-28 130.2 204 74.0
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 7.8e-28 129.0 218 42.7
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 1.0e-27 128.6 236 69.5
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 1.0e-27 128.6 231 69.7
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.3e-27 128.3 424 30.9
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 6.6e-27 125.9 328 56.7
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.5e-26 124.8 241 70.5
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.9e-26 124.4 342 49.4
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 4.3e-26 123.2 336 50.3
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 7.6e-23 112.5 66 84.8
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 7.6e-23 112.5 233 49.8
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 9.9e-23 112.1 384 51.8
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 2.9e-22 110.5 380 51.3
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.1e-21 108.6 246 65.0
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.1e-21 108.6 113 55.8
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 4.2e-21 106.7 380 51.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 5.4e-21 106.3 380 51.6
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 7.1e-21 105.9 115 54.8
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 2.7e-20 104.0 213 38.0
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.3e-19 100.9 109 53.2
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 2.3e-19 100.9 214 70.1
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 8.7e-19 99.0 96 56.2
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.5e-18 98.2 172 59.9
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 6.0e-12 76.3 37 100.0
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.0e-11 75.5 59 55.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.3e-11 74.3 59 55.9
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 3.9e-11 73.6 59 55.9
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.6e-09 68.2 60 55.0
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.6e-09 68.2 60 55.0
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-09 66.6 59 52.5
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.8e-09 66.6 146 78.8
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 6.2e-09 66.2 59 54.2
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 8.2e-09 65.9 101 38.6
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-09 65.9 101 38.6
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.8e-08 64.7 59 47.5
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.4e-08 64.3 85 43.5
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.4e-08 64.3 105 36.2
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 4.0e-08 63.5 46 69.6
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 4.0e-08 63.5 66 43.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 5.3e-08 63.2 59 49.2
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 9.0e-08 62.4 36 86.1
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 9.0e-08 62.4 59 47.5
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.5e-07 61.6 60 50.0
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 2.0e-07 61.2 83 41.0
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.6e-07 60.8 59 45.8
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 4.5e-07 60.1 60 46.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 7.6e-07 59.3 60 48.3
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 7.6e-07 59.3 59 45.8
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.0e-06 58.9 59 44.1
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 1.3e-06 58.5 49 51.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.3e-06 58.5 59 45.8
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.2e-06 57.8 79 39.2
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 2.2e-06 57.8 116 31.0
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 4.9e-06 56.6 113 31.9


User provided reference genes

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