Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 5.6e-127 457.6 228 100.0
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 4.3e-87 325.1 233 71.2
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.7e-70 270.0 230 60.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.2e-68 263.8 236 57.6
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 4.5e-68 261.9 232 56.9
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 8.5e-67 257.7 228 56.6
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 2.7e-65 252.7 233 54.9
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 2.7e-65 252.7 233 54.9
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.7e-65 252.7 233 55.8
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.3e-64 249.6 231 55.4
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.9e-64 248.8 231 55.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.1e-63 247.3 233 56.2
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.4e-63 245.4 241 52.7
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 4.1e-61 238.8 219 53.9
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 9.1e-61 237.7 233 54.1
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.6e-60 236.1 233 52.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-59 234.2 221 55.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.0e-59 231.9 234 53.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 6.5e-59 231.5 234 53.4
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.1e-58 230.7 230 54.8
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 9.4e-58 227.6 234 53.0
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.0e-56 224.2 231 50.2
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.0e-56 224.2 231 49.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.3e-56 223.0 223 53.8
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.5e-55 220.3 226 50.0
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 3.3e-55 219.2 217 52.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 3.3e-55 219.2 231 48.9
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 5.7e-55 218.4 227 49.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.3e-54 217.2 232 50.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.7e-54 216.9 217 50.2
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.7e-54 216.9 233 48.5
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.4e-53 213.8 233 51.5
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.4e-53 213.0 221 49.8
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.4e-53 213.0 231 48.5
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.2e-52 210.7 229 49.8
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.6e-52 210.3 227 48.0
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.5e-52 209.1 222 48.6
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.3e-51 207.2 213 52.1
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.2e-51 206.5 230 47.8
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.5e-50 203.8 232 46.1
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.9e-50 203.4 217 49.8
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.6e-49 200.3 233 48.9
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 8.0e-49 198.0 227 47.1
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.0e-48 197.6 223 47.1
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.4e-48 197.2 230 46.5
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 1.8e-48 196.8 237 46.4
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 2.3e-48 196.4 230 45.2
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 8.8e-48 194.5 262 44.3
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-47 193.7 246 43.5
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.6e-47 193.0 231 47.2
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 5.7e-47 191.8 241 44.0
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.3e-46 190.7 230 46.1
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 2.2e-46 189.9 218 46.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 6.3e-46 188.3 231 44.6
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.6e-44 183.7 229 42.8
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.0e-44 183.3 229 46.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 4.5e-44 182.2 229 44.5
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 4.5e-44 182.2 203 47.8
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 7.7e-44 181.4 231 42.9
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.3e-43 180.6 210 44.8
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.8e-43 179.1 220 45.5
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 5.0e-43 178.7 226 44.2
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 5.0e-43 178.7 226 44.2
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.0e-43 178.7 232 42.2
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 5.0e-43 178.7 213 42.3
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 6.5e-43 178.3 217 44.2
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.1e-42 177.6 223 45.3
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.9e-42 176.8 192 49.5
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.5e-42 176.4 220 42.3
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.5e-42 176.4 224 44.2
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.2e-42 176.0 228 42.1
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.5e-42 175.3 234 41.5
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 7.2e-42 174.9 226 43.4
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 7.2e-42 174.9 226 43.4
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.4e-42 174.5 224 45.1
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 9.4e-42 174.5 215 41.9
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.2e-41 174.1 220 44.5
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.2e-41 174.1 214 43.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.6e-41 173.7 224 43.3
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 2.7e-41 172.9 172 51.2
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 3.6e-41 172.6 226 42.9
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 3.6e-41 172.6 204 45.1
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.7e-41 172.2 226 45.1
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 4.7e-41 172.2 220 42.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 4.7e-41 172.2 215 41.4
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 6.1e-41 171.8 229 41.5
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.0e-40 171.0 214 45.3
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.4e-40 170.6 212 44.8
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.4e-40 170.6 221 45.7
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 5.2e-40 168.7 222 41.0
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.8e-40 167.9 209 43.1
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.2e-39 167.5 251 40.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.5e-39 167.2 244 38.1
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 7.5e-39 164.9 219 42.5
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 7.5e-39 164.9 243 40.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.7e-38 163.7 208 43.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.8e-38 162.9 220 42.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.1e-37 159.5 253 41.5
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.1e-37 159.1 222 41.4
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 4.1e-37 159.1 237 39.2
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 5.4e-37 158.7 248 39.5
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 7.0e-37 158.3 246 39.0
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 9.1e-37 157.9 220 40.0
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 2.0e-36 156.8 212 42.0
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 2.0e-36 156.8 142 55.6
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.7e-36 156.4 284 38.7
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.0e-35 154.5 247 36.0
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 4.2e-34 149.1 209 41.1
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 5.5e-34 148.7 194 43.3
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.2e-33 147.5 229 38.4
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.2e-33 147.5 229 38.4
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.3e-30 137.5 219 33.8
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 2.9e-30 136.3 213 41.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.7e-30 136.0 112 58.9
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-29 134.4 221 35.7
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.1e-29 134.4 228 36.0
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-29 134.4 174 42.0
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.2e-29 132.9 216 36.1
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 5.4e-29 132.1 212 37.7
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.7e-27 127.1 222 36.0
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 6.6e-27 125.2 243 34.2
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.8e-24 117.1 177 37.3
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 6.8e-24 115.2 134 47.0
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 1.7e-22 110.5 182 39.6
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 1.7e-22 110.5 95 57.9
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.2e-22 110.2 207 30.4
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.7e-22 109.4 164 39.6
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 9.2e-21 104.8 221 27.1
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 6.0e-20 102.1 76 60.5
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 7.8e-20 101.7 134 46.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.0e-19 99.8 107 44.9
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 9.5e-18 94.7 94 54.3
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.2e-17 94.4 64 67.2
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.1e-17 93.6 62 71.0
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.6e-17 92.8 131 44.3
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 4.0e-16 89.4 58 72.4
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 4.0e-16 89.4 58 72.4
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 9.8e-15 84.7 80 51.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.3e-14 84.3 126 38.9
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 3.7e-14 82.8 176 26.7
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 5.4e-13 79.0 111 41.4
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.2e-09 65.5 234 25.6
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 5.2e-08 62.4 62 50.0
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 2.0e-07 60.5 87 34.5
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 9.9e-07 58.2 59 44.1


User provided reference genes

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