Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 4.7e-103 377.9 190 100.0
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.1e-63 246.1 191 68.6
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 3.6e-63 245.4 188 67.0
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.8e-62 243.0 184 71.7
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 8.9e-62 240.7 188 66.0
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 4.4e-61 238.4 190 63.7
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 4.4e-61 238.4 190 67.4
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 9.9e-61 237.3 187 66.3
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.4e-59 233.4 166 72.3
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 1.0e-57 227.3 190 62.1
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.3e-57 226.9 185 67.6
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.9e-57 225.3 185 67.6
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 3.9e-57 225.3 188 61.7
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.1e-56 223.8 188 63.8
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.1e-56 223.8 188 63.8
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.5e-56 223.4 156 74.4
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 3.3e-56 222.2 160 68.8
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-56 221.9 190 64.2
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-56 221.9 188 63.8
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.6e-56 221.5 193 62.7
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 7.3e-56 221.1 170 64.7
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 9.6e-56 220.7 192 60.4
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 1.3e-55 220.3 188 63.3
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-55 219.9 174 66.7
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 3.6e-55 218.8 140 75.7
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 3.6e-55 218.8 143 75.5
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 4.8e-55 218.4 181 63.5
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 4.8e-55 218.4 168 70.2
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.1e-54 217.2 191 60.2
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.8e-54 216.5 126 81.7
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.8e-54 216.5 190 61.6
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 4.0e-54 215.3 143 74.1
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 5.3e-54 214.9 138 75.4
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 6.9e-54 214.5 148 72.3
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 9.0e-54 214.2 170 62.9
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 1.5e-53 213.4 139 77.0
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 2.0e-53 213.0 157 66.9
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.0e-53 213.0 151 70.2
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.7e-52 209.9 142 73.2
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 2.9e-52 209.1 147 71.4
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 3.8e-52 208.8 139 72.7
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 8.4e-52 207.6 191 60.7
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.1e-51 207.2 144 70.8
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 3.2e-51 205.7 185 61.6
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 7.1e-51 204.5 144 70.8
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 9.3e-51 204.1 195 58.5
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.7e-50 202.6 143 68.5
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.7e-50 202.6 164 62.8
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 6.0e-50 201.4 119 79.0
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 6.0e-50 201.4 165 63.0
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 6.0e-50 201.4 144 69.4
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.7e-49 199.9 183 56.3
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.7e-49 199.9 191 55.5
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.0e-49 199.1 183 56.8
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 5.1e-49 198.4 148 70.3
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 6.6e-49 198.0 160 63.1
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 6.6e-49 198.0 164 65.2
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 9.6e-48 194.1 175 60.0
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 1.3e-47 193.7 153 66.0
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 2.1e-47 193.0 145 65.5
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 2.1e-47 193.0 191 59.2
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.1e-47 193.0 143 67.8
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 2.1e-47 193.0 147 66.0
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 8.1e-47 191.0 155 63.9
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 8.1e-47 191.0 155 63.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 8.1e-47 191.0 155 65.2
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.4e-46 190.3 136 69.9
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 1.8e-46 189.9 135 68.9
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.8e-46 189.9 148 65.5
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.8e-46 189.9 148 65.5
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.4e-46 189.5 130 70.8
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 2.4e-46 189.5 186 55.9
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 3.1e-46 189.1 184 56.5
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 3.1e-46 189.1 130 70.8
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 4.0e-46 188.7 112 75.9
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 5.3e-46 188.3 138 68.1
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-45 187.2 134 70.1
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.2e-45 187.2 134 70.1
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.2e-45 187.2 141 66.0
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.2e-45 187.2 139 65.5
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 7.6e-45 184.5 131 70.2
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 7.6e-45 184.5 187 56.7
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 7.6e-45 184.5 142 65.5
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 9.9e-45 184.1 125 75.2
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 1.3e-44 183.7 124 75.0
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.7e-44 183.3 152 63.2
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.2e-44 183.0 132 69.7
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.2e-44 183.0 150 65.3
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 2.2e-44 183.0 148 63.5
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 6.4e-44 181.4 138 71.7
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.4e-43 180.3 137 70.8
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.9e-43 179.9 165 58.8
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 4.2e-43 178.7 115 73.9
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 4.2e-43 178.7 159 59.7
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 4.2e-43 178.7 160 60.0
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 7.1e-43 177.9 118 72.9
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-42 176.8 105 81.0
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 2.1e-42 176.4 168 58.9
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.7e-42 176.0 174 55.7
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 4.6e-42 175.3 143 62.9
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 6.0e-42 174.9 153 60.8
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.0e-41 174.1 126 68.3
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.3e-41 173.7 149 60.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 3.3e-40 169.1 128 62.5
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 2.1e-39 166.4 129 66.7
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 8.1e-39 164.5 149 63.1
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 4.0e-38 162.2 140 62.9
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.2e-36 156.4 123 69.9
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.2e-36 156.4 120 65.0
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 8.4e-36 154.5 96 76.0
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.2e-35 152.5 134 61.2
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 9.3e-35 151.0 88 81.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.1e-34 149.8 118 61.9
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 9.6e-32 141.0 126 56.3
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 5.3e-30 135.2 109 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 2.6e-29 132.9 123 50.4
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 7.2e-27 124.8 122 47.5
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 4.6e-26 122.1 144 42.4
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.8e-17 93.6 85 60.0
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 3.9e-17 92.4 98 46.9
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 4.3e-16 89.0 131 41.2
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.1e-14 82.4 82 52.4
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.1e-11 74.3 63 58.7
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.1e-06 57.8 81 40.7
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 3.1e-06 56.2 65 53.8


User provided reference genes

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