Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 4.5e-61 237.7 114 100.0
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 6.4e-55 217.2 114 88.6
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 8.3e-55 216.9 113 89.4
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.8e-54 215.7 114 88.6
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.1e-54 214.5 113 87.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 5.4e-54 214.2 114 88.6
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 7.0e-54 213.8 114 87.7
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 9.2e-54 213.4 113 86.7
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 9.2e-54 213.4 113 88.5
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.2e-53 213.0 113 86.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.6e-53 212.6 113 87.6
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.0e-53 212.2 113 86.7
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.0e-53 212.2 113 86.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.5e-53 211.5 113 87.6
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 4.6e-53 211.1 113 87.6
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.8e-53 210.3 113 86.7
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.8e-53 210.3 113 87.6
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 86.7
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-52 209.5 113 86.7
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.3e-52 209.5 113 86.7
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.3e-52 209.5 113 84.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.3e-52 209.5 113 85.8
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.7e-52 209.1 111 87.4
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.7e-52 209.1 113 86.7
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.3e-52 208.8 113 85.0
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.0e-52 207.6 113 85.0
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.0e-52 207.6 111 86.5
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.0e-52 207.6 111 86.5
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.0e-52 207.6 113 85.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.6e-52 207.2 113 82.3
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 6.6e-52 207.2 113 84.1
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 8.6e-52 206.8 113 85.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.1e-51 206.5 113 85.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.1e-51 206.5 113 85.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.5e-51 206.1 111 86.5
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 113 82.3
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 4.3e-51 204.5 113 84.1
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.3e-51 204.5 113 84.1
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 4.3e-51 204.5 111 83.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 5.6e-51 204.1 109 87.2
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.6e-51 204.1 113 82.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 9.5e-51 203.4 113 84.1
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.2e-50 203.0 112 83.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.6e-50 202.6 116 82.8
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.8e-50 201.8 113 84.1
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.8e-50 201.8 113 83.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.8e-50 201.8 111 82.0
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 3.6e-50 201.4 115 84.3
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 4.7e-50 201.1 113 80.5
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 6.2e-50 200.7 113 82.3
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.4e-49 199.5 111 82.9
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.8e-49 199.1 111 81.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.3e-49 198.7 113 83.2
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.3e-49 198.7 113 81.4
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 4.0e-49 198.0 111 82.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.2e-49 197.6 111 81.1
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.9e-49 196.8 113 81.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 8.9e-49 196.8 113 80.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-48 196.4 111 81.1
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 111 81.1
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-48 196.4 111 81.1
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-48 196.4 111 81.1
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 80.5
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.2e-48 196.4 106 84.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.5e-48 196.1 111 80.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.6e-48 195.3 111 81.1
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 80.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.6e-48 195.3 132 72.7
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.6e-48 195.3 111 81.1
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.4e-48 194.9 111 80.2
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 3.4e-48 194.9 112 79.5
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 4.4e-48 194.5 111 80.2
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 4.4e-48 194.5 110 80.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 7.5e-48 193.7 111 80.2
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 7.5e-48 193.7 111 80.2
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 7.5e-48 193.7 111 81.1
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 7.5e-48 193.7 112 79.5
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.8e-48 193.4 110 79.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.8e-48 193.4 110 80.0
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.2e-47 192.2 110 80.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.9e-47 191.8 111 79.3
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 4.9e-47 191.0 111 79.3
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.9e-47 191.0 110 80.9
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-46 189.9 109 78.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.4e-46 189.5 111 77.5
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 78.8
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 3.2e-46 188.3 110 77.3
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.2e-46 188.3 110 78.2
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.2e-46 188.3 110 78.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.1e-46 188.0 111 77.5
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 5.4e-46 187.6 111 77.5
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-45 186.0 113 77.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.6e-45 186.0 110 77.3
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.0e-45 185.7 112 76.8
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 4.6e-45 184.5 111 73.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 4.6e-45 184.5 110 74.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.7e-44 182.6 110 72.7
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.6e-44 180.3 101 81.2
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 5.6e-43 177.6 95 87.4
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.6e-43 177.6 177 52.5
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.5e-43 176.8 146 61.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-42 176.4 99 81.8
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.6e-42 176.0 99 81.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.7e-42 174.5 112 74.1
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 4.7e-42 174.5 104 75.0
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.1e-41 173.3 105 75.2
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.1e-41 173.3 112 73.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.8e-41 172.6 112 68.8
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 6.8e-41 170.6 100 76.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.9e-41 170.2 101 77.2
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.3e-39 166.4 99 76.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.4e-38 162.9 100 76.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 5.4e-38 161.0 119 67.2
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.5e-37 158.3 86 86.0
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.3e-35 151.4 109 67.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 4.7e-34 147.9 116 66.4
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.5e-32 142.9 106 62.3
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 7.6e-32 140.6 111 55.9
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.9e-30 136.0 110 56.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.7e-29 132.1 111 59.5
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 5.1e-28 127.9 80 72.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.5e-27 126.3 107 52.3
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 6.2e-26 120.9 60 88.3
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-24 115.2 111 49.5
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 4.2e-22 108.2 103 48.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 7.1e-22 107.5 58 81.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.1e-22 107.5 60 81.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.1e-21 105.9 57 77.2
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.5e-21 105.1 99 49.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.8e-21 104.0 80 66.2
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.6e-20 100.9 60 76.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 7.3e-19 97.4 96 49.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 4.8e-18 94.7 149 41.6
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 9.0e-17 90.5 51 84.3
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 9.0e-17 90.5 113 44.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.5e-16 89.7 53 79.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.6e-16 89.0 53 79.2
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-14 82.8 55 67.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.3e-12 75.9 53 69.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 3.9e-12 75.1 46 69.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.8e-10 68.9 109 33.9
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 6.4e-07 57.8 78 46.2


User provided reference genes

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