Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.6e-55 219.2 108 100.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.9e-40 169.1 106 79.2
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.1e-35 153.3 104 73.1
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 1.8e-35 152.5 105 72.4
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.2e-34 149.8 106 75.5
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 5.9e-34 147.5 106 71.7
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.2e-33 145.6 107 72.0
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 1.1e-32 143.3 110 70.9
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 1.4e-32 142.9 104 69.2
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.9e-32 142.5 102 68.6
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 4.2e-32 141.4 105 70.5
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 2.1e-31 139.0 104 68.3
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 2.1e-31 139.0 104 68.3
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.7e-31 138.7 104 67.3
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 7.9e-31 137.1 99 68.7
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 1.4e-30 136.3 109 67.0
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 3.0e-30 135.2 105 68.6
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 5.1e-30 134.4 104 66.3
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 6.7e-30 134.0 105 67.6
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 8.8e-30 133.7 110 66.4
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 8.8e-30 133.7 105 67.6
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 8.8e-30 133.7 104 66.3
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.5e-29 132.1 104 66.3
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.7e-28 129.4 110 62.7
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.1e-27 126.7 88 73.9
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 1.4e-27 126.3 99 60.6
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 1.8e-27 125.9 114 62.3
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 2.4e-27 125.6 108 63.9
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.1e-27 124.8 106 64.2
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 5.3e-27 124.4 106 66.0
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 5.3e-27 124.4 106 61.3
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 9.1e-27 123.6 100 61.0
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 2.6e-26 122.1 104 59.6
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 2.6e-26 122.1 108 63.9
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 1.0e-25 120.2 85 71.8
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 1.3e-25 119.8 105 61.9
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 2.9e-25 118.6 100 59.0
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 3.8e-25 118.2 109 60.6
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 3.8e-25 118.2 112 61.6
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 5.0e-25 117.9 106 62.3
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 8.5e-25 117.1 100 61.0
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-24 116.7 90 62.2
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 1.9e-24 115.9 108 57.4
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.5e-24 115.5 90 61.1
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 3.2e-24 115.2 100 61.0
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.2e-24 115.2 106 63.2
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.2e-24 115.2 90 61.1
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.2e-24 115.2 106 63.2
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.2e-24 115.2 106 63.2
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 7.2e-24 114.0 112 56.2
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 9.4e-24 113.6 103 59.2
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.2e-23 113.2 95 60.0
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.1e-23 112.5 110 54.5
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-23 112.1 110 54.5
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 3.6e-23 111.7 113 59.3
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.6e-23 111.7 108 55.6
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 3.6e-23 111.7 109 56.0
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.6e-23 111.7 109 56.0
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.6e-23 111.7 111 54.1
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.7e-23 111.3 108 56.5
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 4.7e-23 111.3 116 56.0
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 7.9e-23 110.5 99 59.6
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 1.0e-22 110.2 97 54.6
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 2.3e-22 109.0 108 55.6
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.3e-22 109.0 125 54.4
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 5.1e-22 107.8 96 57.3
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 8.8e-22 107.1 107 54.2
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.1e-21 106.7 87 63.2
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 4.4e-21 104.8 108 57.4
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 9.7e-21 103.6 71 73.2
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.3e-20 103.2 108 55.6
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 2.8e-20 102.1 106 51.9
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.5e-18 96.3 105 55.2
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 2.6e-18 95.5 114 49.1
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 5.9e-18 94.4 100 58.0
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 2.5e-16 89.0 95 54.7
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 3.2e-16 88.6 112 48.2
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 3.2e-16 88.6 107 53.3
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 5.5e-16 87.8 91 52.7
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 5.5e-16 87.8 106 50.9
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.4e-14 83.2 112 50.9
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 5.2e-14 81.3 81 54.3
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 8.8e-14 80.5 86 52.3
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 2.0e-13 79.3 79 54.4
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 5.7e-13 77.8 86 50.0
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 7.4e-13 77.4 110 47.3
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.7e-12 76.3 89 53.9
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 2.8e-12 75.5 107 43.9
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 1.8e-11 72.8 83 51.8
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 2.6e-10 68.9 64 54.7
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.0e-09 67.0 101 44.6
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 3.8e-09 65.1 92 39.1
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 3.8e-09 65.1 39 71.8
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 5.0e-09 64.7 66 53.0
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 8.5e-09 63.9 39 69.2
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 1.1e-08 63.5 48 66.7
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.1e-08 63.5 45 60.0
Hma1.2p1_0424F.1_g150510 Hydrangea macrophylla HOM05D016189 ORTHO05D009199 1.5e-08 63.2 76 50.0
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 1.5e-08 63.2 62 51.6
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.5e-08 63.2 73 50.7
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.9e-08 62.8 46 58.7
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 1.9e-08 62.8 44 61.4
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.5e-08 62.4 49 63.3
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 7.2e-08 60.8 48 62.5
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 7.2e-08 60.8 50 58.0
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 7.2e-08 60.8 77 46.8
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 7.2e-08 60.8 51 58.8
FvH4_1g18141 Fragaria vesca HOM05D020383 ORTHO05D022607 9.4e-08 60.5 57 45.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 9.4e-08 60.5 54 51.9
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 9.4e-08 60.5 56 55.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 9.4e-08 60.5 49 61.2
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.2e-07 60.1 48 62.5
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.2e-07 60.1 55 54.5
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.2e-07 60.1 36 72.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.2e-07 60.1 62 54.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.6e-07 59.7 50 56.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.6e-07 59.7 58 56.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.1e-07 59.3 63 47.6
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.1e-07 59.3 47 59.6
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.1e-07 59.3 55 56.4
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.1e-07 59.3 55 56.4
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.1e-07 59.3 55 56.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 2.7e-07 58.9 65 50.8
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.7e-07 58.9 48 62.5
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 2.7e-07 58.9 55 47.3
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.7e-07 58.9 52 57.7
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.6e-07 58.5 51 54.9
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 3.6e-07 58.5 48 56.2
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 4.7e-07 58.2 52 59.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.7e-07 58.2 50 56.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 6.1e-07 57.8 58 51.7
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 6.1e-07 57.8 66 40.9
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 6.1e-07 57.8 81 45.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.1e-07 57.8 48 60.4
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.1e-07 57.8 47 59.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 6.1e-07 57.8 47 59.6
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 8.0e-07 57.4 47 57.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 8.0e-07 57.4 47 57.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.0e-07 57.4 57 52.6
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.0e-07 57.4 57 52.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 8.0e-07 57.4 48 58.3
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.0e-07 57.4 52 57.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 8.0e-07 57.4 57 52.6
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 8.0e-07 57.4 91 41.8
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 58.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 56.2
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 58.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.0e-06 57.0 53 47.2
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.4e-06 56.6 46 56.5
Haze_15029 Corylus avellana HOM05D007433 ORTHO05D020523 1.4e-06 56.6 97 35.1
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 50.9
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 52.8
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 1.4e-06 56.6 44 59.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.4e-06 56.6 50 54.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 47.2
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 47.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-06 56.6 53 47.2
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 56.2
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.8e-06 56.2 47 57.4
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.8e-06 56.2 48 56.2
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.8e-06 56.2 48 56.2
Peaxi162Scf00548g00006 Petunia axillaris HOM05D016189 ORTHO05D009199 1.8e-06 56.2 44 59.1
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.8e-06 56.2 57 54.4
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.3e-06 55.8 69 47.8
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.3e-06 55.8 59 49.2
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.0e-06 55.5 51 51.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.0e-06 55.1 43 62.8
FvH4_1g18110 Fragaria vesca HOM05D020383 ORTHO05D022607 4.0e-06 55.1 55 43.6
FAN19G0205 Fragaria x ananassa HOM05D020383 ORTHO05D022607 4.0e-06 55.1 55 43.6
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.0e-06 55.1 74 41.9
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.0e-06 55.1 48 56.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.2e-06 54.7 50 52.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.2e-06 54.7 52 44.2
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 5.2e-06 54.7 45 60.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 6.7e-06 54.3 51 52.9
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 6.7e-06 54.3 42 59.5
Nitab4.5_0000142g0360 Nicotiana tabacum HOM05D016189 ORTHO05D009199 6.7e-06 54.3 64 46.9
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.7e-06 54.3 56 46.4
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 6.7e-06 54.3 42 59.5
PGSC0003DMG400021432 Solanum tuberosum HOM05D016189 ORTHO05D009199 6.7e-06 54.3 58 53.4
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 8.8e-06 53.9 59 40.7
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 8.8e-06 53.9 55 52.7
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 8.8e-06 53.9 43 55.8
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 8.8e-06 53.9 51 52.9


User provided reference genes

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