Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.5e-225 784.3 391 100.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 5.0e-176 621.3 391 78.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 7.2e-175 617.5 391 78.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 7.2e-175 617.5 391 79.3
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 3.6e-174 615.1 387 78.0
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 6.1e-174 614.4 391 76.5
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.3e-173 612.5 391 78.3
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 4.0e-173 611.7 391 79.3
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 4.4e-172 608.2 392 77.8
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 7.5e-172 607.4 391 78.3
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.4e-170 603.2 391 76.0
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.8e-170 602.8 391 75.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.4e-170 601.3 391 75.2
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.0e-165 587.0 386 75.4
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 6.8e-165 584.3 391 73.7
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.4e-164 582.0 392 75.5
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 5.7e-164 581.3 409 71.9
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 9.8e-164 580.5 409 73.1
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.9e-163 578.2 409 72.1
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 6.4e-163 577.8 388 75.0
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.8e-162 576.2 391 72.6
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.2e-162 575.5 409 73.1
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 5.9e-161 571.2 391 73.1
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.7e-160 569.7 391 75.4
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 5.0e-160 568.2 388 73.2
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 3.3e-159 565.5 393 73.5
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.3e-159 564.3 393 72.0
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 2.8e-158 562.4 370 76.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.7e-158 561.6 391 71.4
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.4e-157 560.1 391 72.1
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.1e-157 558.9 391 70.8
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.1e-157 558.9 393 71.5
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 5.2e-157 558.1 388 72.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.0e-156 556.2 391 71.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 4.4e-156 555.1 365 78.1
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 5.8e-156 554.7 393 71.0
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.3e-155 553.5 375 73.6
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.7e-155 553.1 393 70.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 6.4e-155 551.2 406 69.2
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.9e-154 549.7 415 67.5
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 3.2e-154 548.9 367 76.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.2e-154 547.4 405 69.4
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.7e-153 545.8 391 71.6
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 3.9e-152 542.0 399 70.4
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 6.6e-152 541.2 391 68.8
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.9e-151 539.7 390 67.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.9e-151 539.7 390 68.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 2.5e-151 539.3 391 69.6
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 2.5e-151 539.3 390 68.5
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 5.6e-151 538.1 390 68.2
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 7.3e-151 537.7 367 74.4
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.2e-150 537.0 390 67.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.6e-150 535.4 391 70.1
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 3.6e-150 535.4 391 70.1
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.4e-149 533.5 391 69.8
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.8e-149 533.1 389 68.9
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 4.0e-149 531.9 390 68.7
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 6.8e-149 531.2 391 68.5
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 8.9e-149 530.8 391 70.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 4.4e-148 528.5 385 70.1
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 5.8e-148 528.1 391 69.6
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 7.5e-148 527.7 392 67.6
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.7e-147 525.4 386 69.9
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.9e-146 523.1 376 68.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.4e-146 522.7 391 69.1
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.2e-146 522.3 393 69.2
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.2e-145 520.4 393 66.2
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.1e-145 519.6 392 66.8
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.7e-145 519.2 391 69.6
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.0e-144 517.3 416 63.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.3e-144 516.2 401 66.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 5.1e-144 515.0 393 66.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 5.6e-143 511.5 424 63.7
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.6e-142 510.0 393 65.9
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.1e-142 509.6 382 68.8
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 4.0e-141 505.4 392 66.3
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 5.2e-141 505.0 355 72.4
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.2e-140 503.8 392 65.1
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.2e-139 499.6 370 67.3
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 8.4e-139 497.7 392 65.1
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.1e-138 495.4 378 68.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 5.4e-138 495.0 393 63.6
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.6e-137 493.4 393 63.9
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 2.1e-137 493.0 392 63.3
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 2.7e-137 492.7 368 68.5
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 6.0e-137 491.5 393 63.6
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 6.0e-137 491.5 390 64.1
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.2e-134 483.8 393 63.1
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.2e-134 483.8 393 63.1
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 3.2e-130 469.2 349 68.8
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.2e-129 467.2 390 61.8
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.7e-129 466.1 367 65.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 5.1e-128 461.8 418 58.6
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 4.3e-127 458.8 336 68.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.2e-123 446.4 322 69.3
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.1e-117 427.6 342 63.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 2.2e-115 419.9 379 59.1
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.3e-111 406.0 265 74.0
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.8e-107 392.5 253 73.9
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 5.7e-103 378.6 265 72.1
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 4.1e-101 372.5 305 61.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 3.2e-98 362.8 390 51.5
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.1e-93 347.8 325 57.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 6.7e-88 328.6 203 77.8
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 7.4e-87 325.1 262 61.5
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.1e-85 321.2 188 79.8
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.8e-78 296.6 165 85.5
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.4e-77 294.3 226 66.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.5e-74 283.5 194 75.3
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.6e-71 273.5 279 48.4
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 4.0e-64 249.6 188 62.8
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.2e-63 248.1 219 57.1
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.0e-61 238.8 132 84.1
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 8.8e-56 221.9 217 50.2
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 4.3e-50 203.0 212 47.2
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.1e-49 199.1 115 80.0
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 7.0e-45 185.7 188 53.2
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.5e-44 183.3 124 72.6
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-42 178.3 165 60.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 8.9e-40 168.7 133 62.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 9.8e-39 165.2 133 61.7
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.1e-37 161.8 133 61.7
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.3e-34 150.2 200 43.5
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 8.1e-33 145.6 143 56.6
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.1e-32 145.2 243 38.3
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.1e-32 145.2 182 50.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 3.2e-29 133.7 84 72.6
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.6e-28 131.3 113 62.8
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.3e-26 122.5 63 90.5
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 4.7e-25 119.8 73 80.8
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.2e-22 110.9 74 67.6
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 6.4e-22 109.4 109 53.2
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.3e-14 85.1 155 41.3
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 5.4e-13 79.7 105 41.0
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 5.4e-13 79.7 47 83.0
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.5e-10 71.6 62 59.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 3.3e-10 70.5 47 72.3


User provided reference genes

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