Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1372.5 712 100.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1262.7 712 90.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1247.6 703 89.8
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1242.3 701 89.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1242.3 705 88.8
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1241.5 702 89.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1240.7 709 87.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1239.9 707 88.3
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 710 88.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 704 86.9
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 709 87.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1233.8 715 87.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1231.9 706 89.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1231.5 704 87.4
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1228.4 715 87.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1226.5 704 87.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1224.9 715 86.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1224.2 701 87.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1223.8 701 87.3
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1223.4 702 87.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 703 87.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 702 88.3
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1218.8 697 87.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1216.8 702 87.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1216.8 712 86.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1215.3 715 86.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1214.5 720 86.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1213.4 701 86.9
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1213.4 703 86.2
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1212.6 702 88.0
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1211.8 701 87.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1210.7 701 87.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1208.4 703 85.6
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1208.0 706 86.3
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1204.1 706 86.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1203.3 709 84.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1201.4 727 84.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1199.5 715 85.7
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1196.4 715 85.7
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 698 85.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1189.1 683 88.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1189.1 709 84.8
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1185.2 702 85.9
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1185.2 709 84.8
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1184.1 698 84.2
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 703 84.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1179.9 702 84.8
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 711 85.5
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 711 85.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1168.7 698 83.8
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1165.6 698 83.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 714 83.9
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1150.2 703 83.2
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1149.8 718 83.3
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 713 82.0
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1145.2 720 82.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 710 80.4
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1143.6 701 82.3
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1141.7 710 80.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1138.3 701 83.5
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 706 79.6
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1130.2 701 82.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 700 80.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1125.2 703 81.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 657 85.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1121.3 744 78.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 706 79.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1110.9 702 80.1
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 703 80.1
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 702 79.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 730 79.7
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 702 79.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 702 79.8
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 702 79.8
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 702 78.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 702 79.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 705 78.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 707 80.2
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 703 78.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1095.1 615 88.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1092.0 617 88.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1091.3 703 78.0
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1091.3 703 78.0
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1091.3 700 77.4
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1087.4 702 77.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1085.5 702 77.2
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1084.3 703 80.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1080.9 700 77.4
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1080.9 700 77.4
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1080.9 700 77.4
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1075.5 700 76.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.0e-308 1062.0 726 75.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.6e-308 1061.6 691 80.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 4.4e-303 1044.3 711 77.6
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 9.7e-303 1043.1 661 81.2
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.1e-301 1039.6 698 75.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.1e-301 1037.7 661 79.0
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 7.0e-301 1036.9 703 74.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.9e-299 1031.6 693 75.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.2e-297 1026.2 703 73.8
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.3e-296 1021.9 698 74.5
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.7e-292 1008.4 588 85.9
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 7.2e-290 1000.3 713 73.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.0e-288 995.0 649 76.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 7.5e-287 990.3 705 72.6
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-286 988.4 742 72.1
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-284 981.9 570 87.9
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.0e-280 968.0 541 90.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.7e-268 928.7 704 71.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.1e-264 916.8 738 68.0
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 8.9e-256 887.1 700 66.7
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.1e-244 849.4 527 80.8
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-240 837.0 567 75.1
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-238 829.3 539 78.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 6.0e-228 794.7 451 89.8
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.6e-212 741.9 615 65.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 7.4e-210 734.6 718 54.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.0e-199 699.9 634 56.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-196 689.5 558 69.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.0e-195 687.6 404 86.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-194 682.9 394 87.8
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.7e-180 635.6 517 66.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.8e-174 615.9 638 50.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.3e-166 590.9 634 48.9
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.0e-166 589.0 635 49.1
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-156 555.8 401 75.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.1e-141 508.1 638 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.1e-139 500.0 630 43.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.6e-138 496.9 715 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.6e-134 481.9 635 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.6e-134 481.9 624 43.3
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.3e-133 478.8 306 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.4e-109 399.1 399 53.4
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-108 397.1 399 58.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.6e-106 390.6 250 80.0
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 4.1e-91 340.1 226 73.0
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.7e-71 274.2 226 65.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-57 229.2 126 86.5
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-57 228.4 171 72.5
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.5e-37 162.2 132 59.8
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-31 140.6 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 1.3e-28 132.5 101 66.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 6.6e-25 120.2 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.6e-23 114.4 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 8.9e-22 109.8 96 57.3
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.3e-16 90.9 56 76.8
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 4.7e-15 87.4 67 65.7
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.4e-14 85.9 64 65.6
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.2e-13 82.8 61 65.6
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 5.8e-13 80.5 61 65.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 8.4e-12 76.6 63 66.7
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 3.1e-06 58.2 30 73.3


User provided reference genes

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