Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.3e-307 1058.9 540 100.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 6.8e-240 833.9 531 78.7
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.2e-237 825.1 523 78.8
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.6e-236 822.8 526 78.9
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.6e-236 822.8 525 78.7
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.5e-234 816.2 540 76.5
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.2e-233 813.1 542 76.2
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.2e-233 813.1 520 78.7
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.8e-232 809.3 542 75.8
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.6e-231 805.4 526 76.6
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 2.9e-230 802.0 541 76.2
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.9e-230 801.2 545 75.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.1e-229 800.0 543 75.3
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.4e-229 798.9 541 76.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 7.8e-228 793.9 513 78.4
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.0e-227 793.5 543 74.4
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.9e-226 789.3 521 76.0
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.1e-225 783.9 553 72.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 3.1e-224 781.9 597 68.3
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 6.8e-224 780.8 528 73.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.5e-223 779.6 528 73.5
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 5.8e-223 777.7 523 74.6
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.7e-222 776.2 534 74.7
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.2e-222 775.8 528 72.7
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.9e-222 775.4 530 74.0
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-221 773.5 528 72.5
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 7.1e-221 770.8 540 72.0
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.6e-220 769.6 526 72.8
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 7.8e-220 767.3 540 73.0
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.0e-219 766.9 525 72.4
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.3e-219 766.5 529 72.4
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 5.1e-219 764.6 528 72.0
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.6e-219 763.8 543 71.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.5e-218 762.3 537 72.3
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 5.6e-218 761.1 528 71.4
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.3e-218 760.8 528 73.1
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.7e-217 758.1 535 71.0
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 8.1e-217 757.3 533 72.6
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.8e-216 756.1 527 71.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.8e-215 751.1 545 69.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 9.9e-215 750.4 529 71.6
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 9.9e-215 750.4 528 71.0
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 4.1e-213 745.0 530 70.9
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 7.1e-213 744.2 537 72.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.7e-212 742.3 530 70.8
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 7.8e-212 740.7 529 70.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.7e-211 739.6 528 69.7
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.7e-211 739.6 529 70.3
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.5e-210 736.5 527 69.8
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.1e-209 732.6 524 70.2
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.1e-208 730.3 511 73.6
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 4.0e-208 728.4 516 72.7
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.5e-207 726.5 537 67.2
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.0e-207 726.1 524 69.8
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.4e-207 725.3 504 73.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 6.4e-206 721.1 518 70.1
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.5e-202 709.9 540 68.7
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.8e-201 705.7 530 68.7
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.4e-200 703.4 486 73.7
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 2.2e-198 696.0 483 72.3
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.9e-198 695.7 633 58.8
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.4e-197 693.3 455 77.6
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 4.2e-197 691.8 644 57.9
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 8.7e-195 684.1 531 68.4
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.1e-194 683.7 527 65.8
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.3e-194 682.2 457 77.2
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.3e-194 681.8 520 70.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 6.9e-192 674.5 523 66.2
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 8.4e-190 667.5 461 76.1
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 7.1e-189 664.5 553 62.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.5e-188 662.1 553 62.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 7.9e-188 661.0 559 61.0
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.1e-185 652.9 568 60.6
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.9e-184 647.9 443 75.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 4.5e-183 645.2 529 63.3
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.8e-182 642.1 514 67.1
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.0e-180 634.8 513 63.0
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.3e-179 633.6 501 65.5
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 5.1e-179 631.7 475 69.7
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 4.1e-176 622.1 425 74.6
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 6.9e-176 621.3 455 68.6
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.2e-175 620.5 437 73.5
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.5e-173 612.8 553 59.1
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 6.1e-172 608.2 521 61.4
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.8e-169 599.4 430 71.4
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.0e-167 593.2 512 61.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 7.7e-167 591.3 591 54.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 7.4e-162 574.7 586 54.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-161 573.9 447 66.7
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-161 573.9 583 55.1
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.4e-160 570.5 531 58.0
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 3.8e-158 562.4 435 69.0
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.2e-157 558.1 399 71.9
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 2.6e-154 549.7 500 58.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.7e-150 537.0 474 58.9
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.1e-148 528.5 470 59.4
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 2.3e-147 526.6 458 58.5
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.7e-146 521.2 433 65.6
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 6.3e-145 518.5 481 57.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.0e-143 513.5 402 68.4
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 5.0e-142 508.8 481 56.3
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.2e-137 493.4 387 66.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.0e-126 458.0 307 74.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.9e-125 453.8 403 61.5
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 5.6e-125 452.2 355 67.9
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.9e-121 439.1 537 45.8
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.0e-118 429.1 313 70.0
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.5e-114 417.5 486 47.1
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 7.5e-106 388.7 516 43.8
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.0e-102 376.7 323 63.8
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.9e-102 376.3 252 74.6
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 6.4e-97 359.0 455 45.5
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 9.9e-90 335.1 232 71.6
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.5e-85 321.2 212 75.5
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.9e-85 320.9 462 43.3
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-79 300.1 392 46.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.1e-72 275.8 191 70.2
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.1e-70 269.6 445 40.2
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.5e-69 268.1 203 73.4
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.5e-64 250.8 184 68.5
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 3.5e-63 246.9 667 29.7
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.5e-61 241.5 228 60.1
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.0e-54 217.2 211 55.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.9e-54 216.9 162 64.2
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 5.9e-50 203.0 183 59.0
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.2e-42 178.7 473 31.9
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 5.5e-40 169.9 177 52.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.2e-39 168.7 150 55.3
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.3e-38 164.5 172 54.7
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.0e-37 161.4 140 55.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.7e-37 159.1 97 82.5
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.9e-34 149.8 97 73.2
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.5e-33 146.4 110 71.8
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-31 141.0 149 50.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-31 141.0 149 50.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.8e-30 136.3 86 74.4
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 5.7e-29 133.3 541 27.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 7.5e-29 132.9 97 64.9
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 3.7e-28 130.6 111 63.1
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.9e-25 120.9 78 69.2
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 5.0e-25 120.2 89 73.0
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.5e-21 108.6 72 72.2
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 4.1e-19 100.5 76 69.7
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.1e-19 100.5 90 48.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.2e-18 99.0 236 35.6
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 6.6e-17 93.2 65 72.3
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.5e-16 90.1 62 75.8
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.5e-16 90.1 62 75.8
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.7e-15 87.0 54 70.4
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.3e-12 79.0 78 56.4
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.2e-12 78.2 48 77.1
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.4e-11 74.7 55 69.1
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.7e-07 60.5 189 28.6


User provided reference genes

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