Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0977 Trochodendron aralioides HOM05D003489 ORTHO05D004109 6.1e-91 337.4 166 100.0
TAR629G0486 Trochodendron aralioides HOM05D003489 ORTHO05D004109 3.2e-31 139.0 71 94.4
CSS0010976 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 8.4e-24 114.4 57 93.0
COL.COLO4_19751 Corchorus olitorius HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 91.2
Nitab4.5_0000029g0290 Nicotiana tabacum HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 87.7
Nitab4.5_0006109g0040 Nicotiana tabacum HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 87.7
Rhsim04G0003000 Rhododendron simsii HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 91.2
Solyc07g066630.4 Solanum lycopersicum HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 87.7
Sopen07g034780 Solanum pennellii HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 87.7
PGSC0003DMG402022117 Solanum tuberosum HOM05D003489 ORTHO05D004109 3.2e-23 112.5 57 87.7
CAN.G943.55 Capsicum annuum HOM05D003489 ORTHO05D004109 7.1e-23 111.3 57 86.0
Thecc.07G182300 Theobroma cacao HOM05D003489 ORTHO05D004109 9.3e-23 110.9 57 89.5
vmacro09770 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 9.3e-23 110.9 57 91.2
Nn7g38230 Nelumbo nucifera HOM05D003489 ORTHO05D004109 1.2e-22 110.5 57 89.5
Hma1.2p1_0151F.1_g067260 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 1.6e-22 110.2 57 86.0
AUR62032089 Chenopodium quinoa HOM05D003489 ORTHO05D004109 2.1e-22 109.8 57 89.5
AUR62040866 Chenopodium quinoa HOM05D003489 ORTHO05D004109 2.1e-22 109.8 57 89.5
Peaxi162Scf00452g00336 Petunia axillaris HOM05D003489 ORTHO05D004109 3.5e-22 109.0 57 84.2
Ciclev10005524m.g Citrus clementina HOM05D003489 ORTHO05D004109 4.6e-22 108.6 57 86.0
Lj2A13T24 Lonicera japonica HOM05D003489 ORTHO05D004109 6.1e-22 108.2 57 86.0
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 6.1e-22 108.2 57 82.5
Eucgr.F04461 Eucalyptus grandis HOM05D003489 ORTHO05D004109 1.0e-21 107.5 57 84.2
CiPaw.11G061000 Carya illinoinensis HOM05D003489 ORTHO05D004109 1.3e-21 107.1 57 86.0
Dinv19586 Davidia involucrata HOM05D003489 ORTHO05D004109 1.3e-21 107.1 57 84.2
Nitab4.5_0000029g0300 Nicotiana tabacum HOM05D003489 ORTHO05D004109 1.3e-21 107.1 57 82.5
GSVIVG01036762001 Vitis vinifera HOM05D003489 ORTHO05D004109 1.3e-21 107.1 57 86.0
Ah.10g033720 Amaranthus hybridus HOM05D003489 ORTHO05D004109 1.8e-21 106.7 57 84.2
FvH4_3g14740 Fragaria vesca HOM05D003489 ORTHO05D004109 2.3e-21 106.3 57 84.2
FAN16G2962 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.3e-21 106.3 57 84.2
FAN21G0618 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.3e-21 106.3 57 84.2
FAN25G2342 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.3e-21 106.3 57 84.2
FAN11G1209 Fragaria x ananassa HOM05D003489 ORTHO05D004109 3.0e-21 105.9 57 82.5
Glyma.08G237400 Glycine max HOM05D003489 ORTHO05D004109 3.0e-21 105.9 57 84.2
Phvul.011G177250 Phaseolus vulgaris HOM05D003489 ORTHO05D004109 3.0e-21 105.9 57 84.2
VMungo1127G1841 Vigna mungo HOM05D003489 ORTHO05D004109 3.0e-21 105.9 57 84.2
MD10G1209100 Malus domestica HOM05D003489 ORTHO05D004109 3.9e-21 105.5 57 84.2
Sabra06G0018700 Salix brachista HOM05D003489 ORTHO05D004109 3.9e-21 105.5 57 86.0
TAR626G0906 Trochodendron aralioides HOM05D003489 ORTHO05D004109 3.9e-21 105.5 57 86.0
EL10Ac2g03234 Beta vulgaris HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 84.2
Cfa019401 Carpinus fangiana HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 82.5
Cc05_g16430 Coffea canephora HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 82.5
Haze_07801 Corylus avellana HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 82.5
Manes.14G009200 Manihot esculenta HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 82.5
Medtr8g442750 Medicago truncatula HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 84.2
Oeu019723.1 Olea europaea HOM05D003489 ORTHO05D004109 5.1e-21 105.1 57 80.7
MD05G1229700 Malus domestica HOM05D003489 ORTHO05D004109 6.7e-21 104.8 57 84.2
QL04p087224 Quercus lobata HOM05D003489 ORTHO05D004109 6.7e-21 104.8 57 82.5
Sc18g0003310 Simmondsia chinensis HOM05D003489 ORTHO05D004109 1.5e-20 103.6 57 80.7
Glyma.15G213100 Glycine max HOM05D003489 ORTHO05D004109 1.9e-20 103.2 57 82.5
arahy.Tifrunner.gnm1.ann1.JYF968 Arachis hypogaea HOM05D003489 ORTHO05D004109 2.5e-20 102.8 57 80.7
MSTRG.16098 Avicennia marina HOM05D003489 ORTHO05D004109 2.5e-20 102.8 57 77.2
arahy.Tifrunner.gnm1.ann1.T86MTP Arachis hypogaea HOM05D003489 ORTHO05D004109 3.3e-20 102.4 57 80.7
Prupe.4G132600 Prunus persica HOM05D003489 ORTHO05D004109 3.3e-20 102.4 57 80.7
TWI38G2359 Tripterygium wilfordii HOM05D003489 ORTHO05D004109 3.3e-20 102.4 57 77.2
Gorai.009G353800 Gossypium raimondii HOM05D003489 ORTHO05D004109 4.3e-20 102.1 57 80.7
Lj3g0015370 Lotus japonicus HOM05D003489 ORTHO05D004109 4.3e-20 102.1 56 82.1
AL3G24480 Arabidopsis lyrata HOM05D003489 ORTHO05D004109 5.7e-20 101.7 57 80.7
BcaB06g25510 Brassica carinata HOM05D003489 ORTHO05D004109 5.7e-20 101.7 57 80.7
Carub.0003s1216 Capsella rubella HOM05D003489 ORTHO05D004109 5.7e-20 101.7 57 80.7
Duzib268G0350 Durio zibethinus HOM05D003489 ORTHO05D004109 5.7e-20 101.7 57 80.7
Potri.006G025400 Populus trichocarpa HOM05D003489 ORTHO05D004109 5.7e-20 101.7 57 82.5
Psat4g137680 Pisum sativum HOM05D003489 ORTHO05D004109 7.4e-20 101.3 57 78.9
AT3G12800 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 1.3e-19 100.5 57 78.9
Aa31LG8G80 Aethionema arabicum HOM05D003489 ORTHO05D004109 1.6e-19 100.1 57 80.7
DCAR_019918 Daucus carota HOM05D003489 ORTHO05D004109 1.6e-19 100.1 57 78.9
RcHm_v2.0_Chr5g0024271 Rosa chinensis HOM05D003489 ORTHO05D004109 1.6e-19 100.1 57 80.7
Cpa.g.sc32.29 Carica papaya HOM05D003489 ORTHO05D004109 2.2e-19 99.8 57 80.7
CANSAT80G0618 Cannabis sativa HOM05D003489 ORTHO05D004109 2.8e-19 99.4 57 75.4
ECA240G1189 Erigeron canadensis HOM05D003489 ORTHO05D004109 2.8e-19 99.4 57 80.7
Migut.H01667 Erythranthe guttata HOM05D003489 ORTHO05D004109 2.8e-19 99.4 57 78.9
Gohir.A04G050800 Gossypium hirsutum HOM05D003489 ORTHO05D004109 2.8e-19 99.4 57 78.9
PGR031G2340 Punica granatum HOM05D003489 ORTHO05D004109 2.8e-19 99.4 57 77.2
Aqoxy1G01416 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 78.9
Aqoxy72s003 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 78.9
BcaB04g18721 Brassica carinata HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 77.2
A05p36670 Brassica napus HOM05D001395 ORTHO05D004109 3.7e-19 99.0 57 78.9
C05p55120 Brassica napus HOM05D001395 ORTHO05D004109 3.7e-19 99.0 57 78.9
BolC5t34180H Brassica oleracea HOM05D001395 ORTHO05D004109 3.7e-19 99.0 57 78.9
BraA05t22470Z Brassica rapa HOM05D001395 ORTHO05D004109 3.7e-19 99.0 57 78.9
Ca_25908_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 78.9
Ca_30115_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 78.9
HanXRQChr03g0078181 Helianthus annuus HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 78.9
Oeu034981.1 Olea europaea HOM05D003489 ORTHO05D004109 3.7e-19 99.0 57 77.2
Gohir.A08G232000 Gossypium hirsutum HOM05D003489 ORTHO05D004109 4.8e-19 98.6 57 77.2
MBI18_g11461_MAGBIO Magnolia biondii HOM05D003489 ORTHO05D004109 4.8e-19 98.6 57 78.9
GSVIVG01012113001 Vitis vinifera HOM05D003489 ORTHO05D004109 4.8e-19 98.6 57 78.9
Actinidia22416 Actinidia chinensis HOM05D003489 ORTHO05D004109 6.3e-19 98.2 57 80.7
ATR0697G295 Amborella trichopoda HOM05D003489 ORTHO05D004109 6.3e-19 98.2 57 77.2
Migut.M01523 Erythranthe guttata HOM05D003489 ORTHO05D004109 6.3e-19 98.2 57 75.4
Gohir.D08G252400 Gossypium hirsutum HOM05D003489 ORTHO05D004109 6.3e-19 98.2 57 77.2
Gorai.004G269100 Gossypium raimondii HOM05D003489 ORTHO05D004109 6.3e-19 98.2 57 77.2
ClCG09G022700 Citrullus lanatus HOM05D003489 ORTHO05D004109 8.2e-19 97.8 57 77.2
THA.LOC104826329 Tarenaya hassleriana HOM05D003489 ORTHO05D004109 8.2e-19 97.8 57 77.2
Lsat_1_v5_gn_7_75601 Lactuca sativa HOM05D003489 ORTHO05D004109 1.1e-18 97.4 58 79.3
Sabra12G0094800 Salix brachista HOM05D003489 ORTHO05D004109 1.1e-18 97.4 57 80.7
unitig_578.g16335 Utricularia gibba HOM05D003489 ORTHO05D004109 1.1e-18 97.4 57 78.9
AT2G07640 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 1.4e-18 97.1 56 78.6
Dinv09060 Davidia involucrata HOM05D003489 ORTHO05D004109 1.8e-18 96.7 57 77.2
Manes.03G069001 Manihot esculenta HOM05D003489 ORTHO05D004109 1.8e-18 96.7 57 80.7
Zm00001eb430820 Zea mays HOM05D003489 ORTHO05D004109 1.8e-18 96.7 58 79.3
BcaC01g04035 Brassica carinata HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 75.4
A03p37810 Brassica napus HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 75.4
C03p45870 Brassica napus HOM05D001395 ORTHO05D004109 3.1e-18 95.9 57 75.4
BolC3t16863H Brassica oleracea HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 75.4
BraA03t12936Z Brassica rapa HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 75.4
Potri.012G125900 Populus trichocarpa HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 80.7
Sp3g10955 Schrenkiella parvula HOM05D003489 ORTHO05D004109 3.1e-18 95.9 57 75.4
TAR624G0253 Trochodendron aralioides HOM05D003489 ORTHO05D004109 4.1e-18 95.5 59 78.0
CDE06G1011 Ceratophyllum demersum HOM05D003489 ORTHO05D004109 5.3e-18 95.1 57 73.7
Ciclev10016100m.g Citrus clementina HOM05D003489 ORTHO05D004109 9.0e-18 94.4 56 80.4
CAN.G395.5 Capsicum annuum HOM05D003489 ORTHO05D004109 1.2e-17 94.0 56 75.0
Hma1.2p1_0181F.1_g080070 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 1.2e-17 94.0 57 77.2
Os04g0614000 Oryza sativa ssp. japonica HOM05D003489 ORTHO05D004109 1.2e-17 94.0 57 75.4
PSO541G1044 Papaver somniferum HOM05D003489 ORTHO05D004109 1.2e-17 94.0 57 73.7
PSO675G9327 Papaver somniferum HOM05D003489 ORTHO05D004109 1.2e-17 94.0 57 73.7
Sed0021670 Sechium edule HOM05D003489 ORTHO05D004109 1.5e-17 93.6 56 76.8
Zm00001eb070900 Zea mays HOM05D003489 ORTHO05D004109 2.0e-17 93.2 56 75.0
Psat4g137640 Pisum sativum HOM05D003489 ORTHO05D004109 2.6e-17 92.8 56 73.2
Sp3g10960 Schrenkiella parvula HOM05D003489 ORTHO05D004109 2.6e-17 92.8 56 75.0
Thhalv10021233m.g Eutrema salsugineum HOM05D003489 ORTHO05D004109 4.5e-17 92.0 57 73.7
TPR.G9418 Trifolium pratense HOM05D003489 ORTHO05D004109 4.5e-17 92.0 57 75.4
CAN.G213.21 Capsicum annuum HOM05D003489 ORTHO05D004109 7.7e-17 91.3 57 73.7
CAN.G368.2 Capsicum annuum HOM05D003489 ORTHO05D004109 7.7e-17 91.3 57 71.9
MELO3C012608.2 Cucumis melo HOM05D003489 ORTHO05D004109 7.7e-17 91.3 57 71.9
CsaV3_7G022900 Cucumis sativus L. HOM05D003489 ORTHO05D004109 7.7e-17 91.3 57 71.9
CiPaw.10G063600 Carya illinoinensis HOM05D003489 ORTHO05D004109 1.0e-16 90.9 57 78.9
Sed0005392 Sechium edule HOM05D003489 ORTHO05D004109 1.0e-16 90.9 57 77.2
CSS0044390 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 1.3e-16 90.5 57 71.9
CARHR087330 Cardamine hirsuta HOM05D003489 ORTHO05D004109 1.3e-16 90.5 57 73.7
Lalb_Chr19g0133211 Lupinus albus HOM05D003489 ORTHO05D004109 1.3e-16 90.5 57 68.4
Cpa.g.sc30.144 Carica papaya HOM05D003489 ORTHO05D004109 1.7e-16 90.1 56 75.0
PSO675G1648 Papaver somniferum HOM05D003489 ORTHO05D004109 2.2e-16 89.7 57 73.7
PSO675G6571 Papaver somniferum HOM05D003489 ORTHO05D004109 2.2e-16 89.7 57 73.7
PGR004G2417 Punica granatum HOM05D003489 ORTHO05D004109 3.8e-16 89.0 57 77.2
Eucgr.D00036 Eucalyptus grandis HOM05D003489 ORTHO05D004109 6.5e-16 88.2 59 74.6
SGA_v2.0_scaffold47G17759 Striga asiatica HOM05D003489 ORTHO05D004109 8.5e-16 87.8 60 68.3
CSS0006688 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 1.4e-15 87.0 64 64.1
MD05G1249900 Malus domestica HOM05D003489 ORTHO05D004109 2.5e-15 86.3 57 71.9
vmacro23254 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 2.5e-15 86.3 57 71.9
RcHm_v2.0_Chr5g0020441 Rosa chinensis HOM05D003489 ORTHO05D004109 3.2e-15 85.9 57 73.7
Thecc.02G007100 Theobroma cacao HOM05D003489 ORTHO05D004109 3.2e-15 85.9 56 71.4
CANSAT80G1187 Cannabis sativa HOM05D003489 ORTHO05D004109 4.2e-15 85.5 60 65.0
Cfa000694 Carpinus fangiana HOM05D003489 ORTHO05D004109 4.2e-15 85.5 57 71.9
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 4.2e-15 85.5 63 71.4
COL.COLO4_17645 Corchorus olitorius HOM05D003489 ORTHO05D004109 5.5e-15 85.1 56 76.8
Haze_06095 Corylus avellana HOM05D003489 ORTHO05D004109 5.5e-15 85.1 57 71.9
FvH4_3g12490 Fragaria vesca HOM05D003489 ORTHO05D004109 5.5e-15 85.1 44 86.4
FAN16G1927 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.5e-15 85.1 44 86.4
FAN21G3976 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.5e-15 85.1 44 86.4
FAN25G0305 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.5e-15 85.1 44 86.4
CBR_g6539 Chara braunii HOM05D003489 ORTHO05D004109 9.4e-15 84.3 54 64.8
HPP92_016428 Vanilla planifolia HOM05D003489 ORTHO05D004109 9.4e-15 84.3 56 67.9
HPP92_026361 Vanilla planifolia HOM05D003489 ORTHO05D004109 9.4e-15 84.3 56 67.9
Lsat_1_v5_gn_3_107180 Lactuca sativa HOM05D003489 ORTHO05D004109 1.6e-14 83.6 57 64.9
Lj2A345T27 Lonicera japonica HOM05D003489 ORTHO05D004109 2.1e-14 83.2 57 66.7
Pp3c20_21940 Physcomitrium patens HOM05D003489 ORTHO05D004109 2.1e-14 83.2 57 68.4
Prupe.4G113900 Prunus persica HOM05D003489 ORTHO05D004109 2.7e-14 82.8 50 76.0
CANSAT80G0498 Cannabis sativa HOM05D003489 ORTHO05D004109 3.6e-14 82.4 57 61.4
SEGI_41285 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 3.6e-14 82.4 56 69.6
Duzib132G1003 Durio zibethinus HOM05D003489 ORTHO05D004109 4.6e-14 82.0 55 74.5
HanXRQChr12g0381551 Helianthus annuus HOM05D003489 ORTHO05D004109 4.6e-14 82.0 57 68.4
CDE02G2163 Ceratophyllum demersum HOM05D003489 ORTHO05D004109 6.1e-14 81.6 62 61.3
Oeu043715.1 Olea europaea HOM05D003489 ORTHO05D004109 6.1e-14 81.6 41 90.2
CAN.G15.4 Capsicum annuum HOM05D003489 ORTHO05D004109 7.9e-14 81.3 57 63.2
CAN.G764.1 Capsicum annuum HOM05D003489 ORTHO05D004109 7.9e-14 81.3 59 62.7
AagrBONN_evm.TU.Sc2ySwM_117.344 Anthoceros agrestis HOM05D003489 ORTHO05D004109 1.4e-13 80.5 57 64.9
Duzib248G1596 Durio zibethinus HOM05D003489 ORTHO05D004109 2.3e-13 79.7 56 73.2
ECA246G5026 Erigeron canadensis HOM05D003489 ORTHO05D004109 2.3e-13 79.7 57 64.9
PSO675G0014 Papaver somniferum HOM05D003489 ORTHO05D004109 6.7e-13 78.2 44 77.3
SMO116G0107 Selaginella moellendorffii HOM05D003489 ORTHO05D004109 6.7e-13 78.2 44 79.5
SEGI_16258 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 8.8e-13 77.8 56 64.3
Gohir.A12G047600 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.1e-12 77.4 55 69.1
CAN.G426.31 Capsicum annuum HOM05D003489 ORTHO05D004109 3.3e-12 75.9 49 67.3
Gohir.D12G046300 Gossypium hirsutum HOM05D003489 ORTHO05D004109 4.3e-12 75.5 55 67.3
Gorai.008G049000 Gossypium raimondii HOM05D003489 ORTHO05D004109 4.3e-12 75.5 55 65.5
Pp3c23_13630 Physcomitrium patens HOM05D003489 ORTHO05D004109 1.7e-11 73.6 43 76.7
Mapoly0057s0046 Marchantia polymorpha HOM05D003489 ORTHO05D004109 8.2e-11 71.2 50 64.0
CAN.G300.7 Capsicum annuum HOM05D003489 ORTHO05D004109 5.3e-10 68.6 39 79.5
AagrBONN_evm.TU.Sc2ySwM_117.1485 Anthoceros agrestis HOM05D003489 ORTHO05D004109 6.9e-10 68.2 69 52.2
Cre17.g731850 Chlamydomonas reinhardtii HOM05D003489 ORTHO05D004109 5.9e-09 65.1 41 70.7
Atru.chr10.457 Acer truncatum HOM05D003489 ORTHO05D004109 7.7e-09 64.7 41 73.2
SMO172G0050 Selaginella moellendorffii HOM05D003489 ORTHO05D004109 8.5e-08 61.2 78 47.4


User provided reference genes

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